RNA id: TU52773



Basic Information


Item Value
RNA id TU52773
length 469
RNA type TUCP
GC content 0.51
exon number 4
gene id G42344
representative False

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21426660 ~ 21486808 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tctctctctctgcagtgctgcAGGTTAATTAACCAACCTCTTCCTGCGCTTGCTGTCAAGGAAGTAAATCGCCACCATGAGTACGGACGCGGAGATGGCCGTTTTTGGCCCGGCTGCCATATACCTGAGGAAGCCTGAGAAGGAGAGGATTGAGGCTCAGAACAAGCCCTTTGATGCCAAAACTGCCTGCTACGTGATTGATGCCAAGGAGCTGTATGTCAAAGGTGTCATCCAGAGTAAAGAAGGGGGCAAAGCCACTGTCAAGAATGAGAAGGGGGAGACTCTAACAGTCAAGGAGGACGATGTCCACCCAATGAATCCTCCCAAGTACGACAAAATTGAGGACATGGCGATGATGACCCACCTGAACGAGCCCGCTGTGCTGTTTAACCTTAAAGAGCGTTACGCAGCATGGATGATCTACACCTACTCTGGGCTGTTTTGTGCAACTGTGAACCCCTACAAGTNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU52762 lncRNA upstream 13761 21300608 ~ 21471560 (+) False AMCG00013118
TU52753 lncRNA upstream 73332 21364104 ~ 21411989 (+) True G42331
TU52752 lncRNA upstream 181108 21256585 ~ 21304213 (+) False G42330
TU52751 lncRNA upstream 225733 21256585 ~ 21259588 (+) True G42330
TU52670 lncRNA upstream 594989 20889675 ~ 20890332 (+) True G42277
TU52776 lncRNA downstream 12165 21498973 ~ 21503924 (+) True G42347
TU52783 lncRNA downstream 41973 21528781 ~ 21600968 (+) True G42350
TU52917 lncRNA downstream 661486 22148294 ~ 22148513 (+) True G42448
TU52918 lncRNA downstream 662777 22149585 ~ 22149787 (+) True G42449
TU52926 lncRNA downstream 770698 22257506 ~ 22259912 (+) False AMCG00013147
AMCG00013120 mRNA upstream 4041 21475618 ~ 21481280 (+) True AMCG00013120
AMCG00013140 mRNA upstream 4041 21476260 ~ 21481280 (+) True AMCG00013140
AMCG00013124 mRNA upstream 36603 21421622 ~ 21448718 (+) True AMCG00013124
AMCG00013126 mRNA upstream 64005 21416485 ~ 21421316 (+) False AMCG00013126
AMCG00013119 mRNA upstream 85009 21399406 ~ 21400312 (+) True AMCG00013119
AMCG00013127 mRNA downstream 58811 21545619 ~ 21547056 (+) True AMCG00013127
AMCG00013129 mRNA downstream 64364 21551172 ~ 21585017 (+) True AMCG00013129
AMCG00013146 mRNA downstream 286434 21773242 ~ 21911741 (+) True AMCG00013146
AMCG00013148 mRNA downstream 443247 21930055 ~ 22228496 (+) True AMCG00013148
AMCG00013147 mRNA downstream 761689 22248497 ~ 22260816 (+) True AMCG00013147
TU52756 other upstream 66534 21370843 ~ 21418787 (+) True AMCG00013126
TU52747 other upstream 206593 21269675 ~ 21278728 (+) True G42326
TU52302 other upstream 2456043 19025561 ~ 19029278 (+) True G41978
TU51470 other upstream 5854694 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 6005955 15477179 ~ 15479366 (+) True G41264
TU52922 other downstream 755621 22242429 ~ 22245790 (+) True G42453
TU53407 other downstream 3260684 24747492 ~ 24749395 (+) True G42846
TU53419 other downstream 3281616 24768424 ~ 24770148 (+) True G42858
TU53706 other downstream 4033359 25520167 ~ 25521681 (+) False AMCG00013236
TU53847 other downstream 4768171 26254979 ~ 26257842 (+) False AMCG00013255

Expression Profile