RNA id: TU52783


Basic Information

Item Value
RNA id TU52783
length 1555
lncRNA type read_through
GC content 0.39
exon number 2
gene id G42350
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21528781 ~ 21600968 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgaacaggtgttcctaataatcctttaggtgagtgtatatatatatataataaacacacacacacacacacaccgtacCAAACTGCTCCTGTAGTTGTGCGCATCATGTCCAGGAAGAAAAAGATAATATACAAGCACCTGGTAtcattatttgaaatacatttgtaagagTTTTAAAACTTggaggttttcttttaataatgcatacatTGCGATGCCTAACCATTTCAGATGCAGTTGTCTTGGTGTATATCTGGTCTTATAGTCAGTGTTCACCATTGCTCTAAATGAAGATCCATGGCAGAGTTCAAATTGAGGTCTGTAACATCCAAAAATTCTGCATTGAAGATACTGGGCCCAGCTGATGGGACAGACGTGTTAAAGCCAGTGGCGGAGCTGGGTGGGGTTAGATCCAGCCACTCCATCGTCTCCCATGGGGACTCGGTAAAGCTCAGGTTCAGGGCCTGGCCCTCTGTCGAAGGCGATACTCTGGCATTCATTGGTGACAGCGGAGTTTCCATTATATCGCGGCTGGTGAGCAGCTTTTCTTGATGGGGTCCCGGAAATCCATCCGCCGCTTCCTCCAGCTGAGATTCGTCATTCCCGATTTTGAGAAGAACAATTTCACTTGCTCTACTCATGGGACTGTTCAATAAGGCCTCCAGGTGATTGTCTCCACTGCTGGCTCCGTGTTCAAAGGGAAGCTGGGAGGGAGACAAGTGCTCGTAGTGCCTGTGGATTTTGGGTAGAGGCACGCTGGCGCTTCCTGAAGAAACTGTAATGTGAGGCACAACTTTTGTTACGCAAGGCCTCTCTTCTTTGGCATTAGCTGGCATTTCTGGAAACGCACAGAAGaagcacattttgtgttttaacacTGAGCACTTATTGTTACACTTcagcactgtttaaaatgtatatattcataaagtATGGCACATAGGACAAGATAAAAGGTGTGCCTTAAGTATCACAACCAACACTACcactttttaaaactttcatttttttgtttgttttgctgatgAGAATAAATCTGGATATGCTTAAGGAGTAAAAATACAGGGCATTACACATACTGTAAGCAATTGGGCAAGATGCCTTGGAGCCCAAATTGTTTTCAGTTATGAAGCAATAACTCAGAAGCCACAAGGTGATTTACAAAAGATATCTTAACCCTGAAAAATGTATCTGGAATATGTTAACACCCAAAAGGTTGTcttctttattatatatttgtcctCATTAATAATAGTCTTATCATAATTCTAAACAATGtacaatcaatatttttaaatgacagaaaaaacacaatgtttccGTGTGTGATCTTTATGTTCATTGCAGCACAACATGTTCGTTTTGTTGGCTATTATGACATTTTTGACACCTACTGCCTCATCCTAGttgaatttttaattttaattttaaatgaatggggataatacatataaattattaaatagagTTGtagtgtgttttgcttttaatttaaatacctttttaagtcaaagaacacaaattaatttatcAAGCAGTTCATGTAATATATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52774 lncRNA upstream 19957 21472716 ~ 21508824 (+) True G42345
TU52776 lncRNA upstream 24857 21498973 ~ 21503924 (+) True G42347
TU52762 lncRNA upstream 57221 21300608 ~ 21471560 (+) False AMCG00013118
TU52753 lncRNA upstream 116792 21364104 ~ 21411989 (+) True G42331
TU52752 lncRNA upstream 224568 21256585 ~ 21304213 (+) False G42330
TU52917 lncRNA downstream 547326 22148294 ~ 22148513 (+) True G42448
TU52918 lncRNA downstream 548617 22149585 ~ 22149787 (+) True G42449
TU52926 lncRNA downstream 656538 22257506 ~ 22259912 (+) False AMCG00013147
TU52933 lncRNA downstream 656538 22257506 ~ 22259912 (+) False AMCG00013147
TU52939 lncRNA downstream 665389 22266357 ~ 22266636 (+) True G42459
AMCG00013125 mRNA upstream 42088 21486231 ~ 21486693 (+) True AMCG00013125
AMCG00013142 mRNA upstream 42103 21486231 ~ 21486678 (+) True AMCG00013142
AMCG00013120 mRNA upstream 47501 21475618 ~ 21481280 (+) True AMCG00013120
AMCG00013140 mRNA upstream 47501 21476260 ~ 21481280 (+) True AMCG00013140
AMCG00013124 mRNA upstream 80063 21421622 ~ 21448718 (+) True AMCG00013124
AMCG00013146 mRNA downstream 172274 21773242 ~ 21911741 (+) True AMCG00013146
AMCG00013148 mRNA downstream 329087 21930055 ~ 22228496 (+) True AMCG00013148
AMCG00013147 mRNA downstream 647529 22248497 ~ 22260816 (+) True AMCG00013147
AMCG00013149 mRNA downstream 675374 22276342 ~ 22292501 (+) True AMCG00013149
AMCG00013152 mRNA downstream 778267 22379235 ~ 22470187 (+) True AMCG00013152
TU52772 other upstream 41973 21426660 ~ 21486808 (+) True G42344
TU52771 other upstream 41973 21484907 ~ 21486808 (+) False G42344
TU52773 other upstream 41973 21485321 ~ 21486808 (+) False G42344
TU52756 other upstream 109994 21370843 ~ 21418787 (+) True AMCG00013126
TU52747 other upstream 250053 21269675 ~ 21278728 (+) True G42326
TU52922 other downstream 641461 22242429 ~ 22245790 (+) True G42453
TU53407 other downstream 3146524 24747492 ~ 24749395 (+) True G42846
TU53419 other downstream 3167456 24768424 ~ 24770148 (+) True G42858
TU53706 other downstream 3919199 25520167 ~ 25521681 (+) False AMCG00013236
TU53847 other downstream 4654011 26254979 ~ 26257842 (+) False AMCG00013255

Expression Profile