RNA id: TU52820


Basic Information

Item Value
RNA id TU52820
length 481
lncRNA type read_through
GC content 0.48
exon number 5
gene id G42372
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21287320 ~ 21310348 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATCTCTTCAGTGGAGAATCCGGCGCTGGAAAGACTGTGAACACGAAACGTGTCATCCAGTACTTTGCCACCATTGCAGTGTCATCTGACAAGAAGAAGGAGGCACAGCCTGGCAAAATACAGGGAACACTGGAGGATCAAATCATCTCAGCCAACCCTCTGCTGGAGGCTTTCGGTAATGCCAAGACAGTGAGGAATGACAACTCCTCTCGCTTTGGTAAATTCATCAGAATTCACTTTGGAACCACAGGAAAACTGGCTTCTGCTGACATTGAGACTTACTTGCTGGAGAAGTCCAGAGTAACATTCCAGCTGTCTGAAGAAAGGAGCTACCACATCTTTTATCAGATCATGACCAACCACAAGCCAGAGCTCATtgACATGCTTCTGATCACCACCAATCCCTATGACTTCCCTATGATCAGCCAGGGTCAGATCTCTGTGGCCAGCATTGATGACAAAGAGGAGCTGGTTGCCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52826 lncRNA downstream 77671 21209265 ~ 21209649 (-) True G42378
TU52824 lncRNA downstream 91970 21194149 ~ 21195350 (-) True G42376
TU52672 lncRNA downstream 397032 20889683 ~ 20890288 (-) True G42278
TU52673 lncRNA downstream 397032 20889683 ~ 20890288 (-) False G42278
TU52621 lncRNA downstream 613092 20666345 ~ 20674228 (-) True G42242
TU52830 lncRNA upstream 30622 21340970 ~ 21427716 (-) True G42382
TU52831 lncRNA upstream 36127 21346475 ~ 21346834 (-) True G42383
TU52834 lncRNA upstream 89296 21399644 ~ 21400158 (-) True G42386
TU52822 lncRNA upstream 138544 21448892 ~ 21449281 (-) False AMCG00013131
TU52907 lncRNA upstream 583276 21893624 ~ 21905597 (-) True G42440
AMCG00013117 mRNA downstream 8658 21270349 ~ 21278662 (-) True AMCG00013117
AMCG00013114 mRNA downstream 23838 21248082 ~ 21263482 (-) True AMCG00013114
AMCG00013106 mRNA downstream 190901 21079606 ~ 21096419 (-) True AMCG00013106
AMCG00013102 mRNA downstream 301435 20984036 ~ 20985885 (-) True AMCG00013102
AMCG00013103 mRNA downstream 433256 20841618 ~ 20854064 (-) True AMCG00013103
AMCG00013113 mRNA upstream 17852 21328200 ~ 21335131 (-) True AMCG00013113
AMCG00013110 mRNA upstream 25809 21336157 ~ 21338083 (-) True AMCG00013110
AMCG00013116 mRNA upstream 40111 21350459 ~ 21350814 (-) True AMCG00013116
AMCG00013115 mRNA upstream 40915 21351263 ~ 21375164 (-) True AMCG00013115
AMCG00013138 mRNA upstream 83928 21394276 ~ 21398255 (-) True AMCG00013138
TU52536 other downstream 741509 20531194 ~ 20545811 (-) True AMCG00013090
TU52412 other downstream 1304440 19980336 ~ 19982880 (-) True G42076
TU52331 other downstream 2215902 19068245 ~ 19071418 (-) True AMCG00013070
TU52316 other downstream 2264542 18977060 ~ 19022778 (-) False AMCG00013071
TU52315 other downstream 2288554 18977060 ~ 18998766 (-) True AMCG00013071
TU52819 other upstream 25869 21336217 ~ 21517177 (-) True G42371
TU52829 other upstream 26719 21337067 ~ 21375763 (-) True G42381
TU52823 other upstream 40312 21350660 ~ 21360107 (-) True G42375
TU52821 other upstream 101591 21411939 ~ 21414964 (-) False AMCG00013137
TU52837 other upstream 201736 21512084 ~ 21514693 (-) False AMCG00013133

Expression Profile