RNA id: TU52823



Basic Information


Item Value
RNA id TU52823
length 386
RNA type TUCP
GC content 0.52
exon number 4
gene id G42375
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21350660 ~ 21360107 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTTATTAACACCAAGAAGAAGCTTGAGAGTGACATTGCTCAACTACAAGGTGAAGTTGATGACACCATCCAGGAAGCAAGAAATGCAGAAGAAAAGGCCAAGAAGGCAATTACTGATGCTGCTATGATGGCTGAGGAGCTGAAGAAGGAGCAGGACACCAGCTCTCACCTGGAGAGAATGAAGAAGAACCTGGAGGTCACAGTGAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGCAGCTGGCAATGAAGGGTGGAAAGAAGCAGCTCCAGAAACTGGAGGCCAGGGTGCGTGAGCTGGAGGTCACAGTGAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGCAGCTGGCAATGAAGGGTGGAAAGAAGCAGCTCCAGAAACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU52831 lncRNA downstream 3826 21346475 ~ 21346834 (-) True G42383
TU52820 lncRNA downstream 40312 21287320 ~ 21310348 (-) True G42372
TU52826 lncRNA downstream 141011 21209265 ~ 21209649 (-) True G42378
TU52824 lncRNA downstream 155310 21194149 ~ 21195350 (-) True G42376
TU52672 lncRNA downstream 460372 20889683 ~ 20890288 (-) True G42278
TU52834 lncRNA upstream 39537 21399644 ~ 21400158 (-) True G42386
TU52822 lncRNA upstream 88785 21448892 ~ 21449281 (-) False AMCG00013131
TU52907 lncRNA upstream 533517 21893624 ~ 21905597 (-) True G42440
TU52919 lncRNA upstream 789474 22149581 ~ 22149792 (-) True G42450
TU53044 lncRNA upstream 1214451 22574558 ~ 22574827 (-) True G42544
AMCG00013110 mRNA downstream 12577 21336157 ~ 21338083 (-) True AMCG00013110
AMCG00013113 mRNA downstream 15529 21328200 ~ 21335131 (-) True AMCG00013113
AMCG00013112 mRNA downstream 39354 21300093 ~ 21311306 (-) True AMCG00013112
AMCG00013111 mRNA downstream 61591 21287146 ~ 21289069 (-) True AMCG00013111
AMCG00013117 mRNA downstream 71998 21270349 ~ 21278662 (-) True AMCG00013117
AMCG00013138 mRNA upstream 34169 21394276 ~ 21398255 (-) True AMCG00013138
AMCG00013137 mRNA upstream 52259 21412366 ~ 21422118 (-) True AMCG00013137
AMCG00013131 mRNA upstream 88222 21448329 ~ 21449954 (-) True AMCG00013131
AMCG00013136 mRNA upstream 91925 21452032 ~ 21454895 (-) True AMCG00013136
AMCG00013132 mRNA upstream 108922 21469029 ~ 21474368 (-) True AMCG00013132
TU52828 other downstream 42967 21306186 ~ 21307693 (-) False AMCG00013112
TU52810 other downstream 49239 21252107 ~ 21301421 (-) True G42366
TU52536 other downstream 804849 20531194 ~ 20545811 (-) True AMCG00013090
TU52412 other downstream 1367780 19980336 ~ 19982880 (-) True G42076
TU52331 other downstream 2279242 19068245 ~ 19071418 (-) True AMCG00013070
TU52821 other upstream 51832 21411939 ~ 21414964 (-) False AMCG00013137
TU52837 other upstream 151977 21512084 ~ 21514693 (-) False AMCG00013133
TU53293 other upstream 2483976 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 3522012 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 3665769 25025876 ~ 25029004 (-) False AMCG00013216

Expression Profile