RNA id: TU52826


Basic Information

Item Value
RNA id TU52826
length 305
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G42378
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21209265 ~ 21209649 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTGGGCCTCCTGAAGAGCTTTCTTCTCCTTTGTCAACTTGGAGATATTCTCATCAAGAGATGCCATCTCCTCAGTCAGATTTTTCACCTTGTTTTCTGTGGCATGTTTCTCCTTCTCCACTTTGGCCAGGGTGAGCTCTAAGTCATCAATGTCTTTCTTGAGCTCAGAGCACTCATCCTCCAGTTTCCTCTTCTTTGCAGTCAGCTCAGCATTCATTTCCTCCTCATCATCCAGTCTCTCTGCTGTCTCTTTCAATTTTGCCTCAAGCTGGATTTTACTCTTGATGAGGCCTTCACACCTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52824 lncRNA downstream 13915 21194149 ~ 21195350 (-) True G42376
TU52672 lncRNA downstream 318977 20889683 ~ 20890288 (-) True G42278
TU52673 lncRNA downstream 318977 20889683 ~ 20890288 (-) False G42278
TU52621 lncRNA downstream 535037 20666345 ~ 20674228 (-) True G42242
TU52493 lncRNA downstream 804180 20401708 ~ 20405085 (-) True G42136
TU52820 lncRNA upstream 77671 21287320 ~ 21310348 (-) True G42372
TU52830 lncRNA upstream 131321 21340970 ~ 21427716 (-) True G42382
TU52831 lncRNA upstream 136826 21346475 ~ 21346834 (-) True G42383
TU52834 lncRNA upstream 189995 21399644 ~ 21400158 (-) True G42386
TU52822 lncRNA upstream 239243 21448892 ~ 21449281 (-) False AMCG00013131
AMCG00013106 mRNA downstream 112846 21079606 ~ 21096419 (-) True AMCG00013106
AMCG00013102 mRNA downstream 223380 20984036 ~ 20985885 (-) True AMCG00013102
AMCG00013103 mRNA downstream 355201 20841618 ~ 20854064 (-) True AMCG00013103
AMCG00013097 mRNA downstream 449263 20747489 ~ 20760002 (-) True AMCG00013097
AMCG00013096 mRNA downstream 474996 20685271 ~ 20734269 (-) True AMCG00013096
AMCG00013114 mRNA upstream 38433 21248082 ~ 21263482 (-) True AMCG00013114
AMCG00013117 mRNA upstream 60700 21270349 ~ 21278662 (-) True AMCG00013117
AMCG00013111 mRNA upstream 77497 21287146 ~ 21289069 (-) True AMCG00013111
AMCG00013112 mRNA upstream 90444 21300093 ~ 21311306 (-) True AMCG00013112
AMCG00013113 mRNA upstream 118551 21328200 ~ 21335131 (-) True AMCG00013113
TU52536 other downstream 663454 20531194 ~ 20545811 (-) True AMCG00013090
TU52412 other downstream 1226385 19980336 ~ 19982880 (-) True G42076
TU52331 other downstream 2137847 19068245 ~ 19071418 (-) True AMCG00013070
TU52316 other downstream 2186487 18977060 ~ 19022778 (-) False AMCG00013071
TU52315 other downstream 2210499 18977060 ~ 18998766 (-) True AMCG00013071
TU52810 other upstream 42458 21252107 ~ 21301421 (-) True G42366
TU52828 other upstream 96537 21306186 ~ 21307693 (-) False AMCG00013112
TU52819 other upstream 126568 21336217 ~ 21517177 (-) True G42371
TU52829 other upstream 127418 21337067 ~ 21375763 (-) True G42381
TU52823 other upstream 141011 21350660 ~ 21360107 (-) True G42375

Expression Profile