RNA id: TU52907


Basic Information

Item Value
RNA id TU52907
length 302
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G42440
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21893624 ~ 21905597 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTGAGGAAGCCGATCTCCGCATTGGGGTGCAGTCCGTACAGGTTCCGGGCCTACCTGATTGAAGTTGTCCAGGGCCTTGTGCAGGTTTGCGTGCATGCCAGTCGGCGGCTCATTGGTGATTTTGATGGAGTTCTCCAGGATACCCTGAGGAATGATGTGAGCGTCAGCAGTGCCGGCGGGCTCAGCGCTGATGAAGACGCGGAACTCCTGGTTGCTGCCCTCGCTGTGCTGCTCCAGCTTCTTCTCCAGGGTGCTCAGCCATTTGGCCACCAGATGGATATTCTAGTAGGAACAAATGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52822 lncRNA downstream 444343 21448892 ~ 21449281 (-) False AMCG00013131
TU52830 lncRNA downstream 465908 21340970 ~ 21427716 (-) True G42382
TU52834 lncRNA downstream 493466 21399644 ~ 21400158 (-) True G42386
TU52831 lncRNA downstream 546790 21346475 ~ 21346834 (-) True G42383
TU52820 lncRNA downstream 583276 21287320 ~ 21310348 (-) True G42372
TU52919 lncRNA upstream 243984 22149581 ~ 22149792 (-) True G42450
TU53044 lncRNA upstream 668961 22574558 ~ 22574827 (-) True G42544
TU53058 lncRNA upstream 800469 22706066 ~ 22706337 (-) True G42553
TU53062 lncRNA upstream 910559 22816156 ~ 22816369 (-) True G42557
TU53237 lncRNA upstream 1873328 23778925 ~ 23779350 (-) True G42704
AMCG00013130 mRNA downstream 266228 21596075 ~ 21627396 (-) True AMCG00013130
AMCG00013141 mRNA downstream 343898 21546040 ~ 21549726 (-) True AMCG00013141
AMCG00013135 mRNA downstream 349235 21541433 ~ 21544389 (-) True AMCG00013135
AMCG00013143 mRNA downstream 362000 21529413 ~ 21531624 (-) True AMCG00013143
AMCG00013139 mRNA downstream 364578 21527273 ~ 21529046 (-) True AMCG00013139
AMCG00013144 mRNA upstream 19005 21924602 ~ 21935718 (-) True AMCG00013144
AMCG00013145 mRNA upstream 118379 22023976 ~ 22039234 (-) True AMCG00013145
AMCG00013150 mRNA upstream 387731 22293328 ~ 22312757 (-) True AMCG00013150
AMCG00013151 mRNA upstream 414065 22319662 ~ 22367010 (-) True AMCG00013151
AMCG00013153 mRNA upstream 465268 22370865 ~ 22375360 (-) True AMCG00013153
TU52819 other downstream 376447 21336217 ~ 21517177 (-) True G42371
TU52837 other downstream 378931 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 478660 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 517861 21337067 ~ 21375763 (-) True G42381
TU52823 other downstream 533517 21350660 ~ 21360107 (-) True G42375
TU53293 other upstream 1938486 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 2976522 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 3120279 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 3169796 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 3258386 25163983 ~ 25166758 (-) False AMCG00013223

Expression Profile