RNA id: TU52917


Basic Information

Item Value
RNA id TU52917
length 220
lncRNA type intronic
GC content 0.53
exon number 1
gene id G42448
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22148294 ~ 22148513 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgcatcaatgagccttggccgcccatgaccctgtcgccggttcaccgcttttccttccttggaccacttttgataggtactgaccactgcagaccgggaacaccccacaagagctgcagttttggagatgctctgacccagtcgtctagccatcacaatttggcccttgtcaaagtcgctcagatccttacgcttgcccatttttcctgcttctaacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52783 lncRNA upstream 547326 21528781 ~ 21600968 (+) True G42350
TU52774 lncRNA upstream 639470 21472716 ~ 21508824 (+) True G42345
TU52776 lncRNA upstream 644370 21498973 ~ 21503924 (+) True G42347
TU52762 lncRNA upstream 676734 21300608 ~ 21471560 (+) False AMCG00013118
TU52753 lncRNA upstream 736305 21364104 ~ 21411989 (+) True G42331
TU52918 lncRNA downstream 1072 22149585 ~ 22149787 (+) True G42449
TU52926 lncRNA downstream 108993 22257506 ~ 22259912 (+) False AMCG00013147
TU52933 lncRNA downstream 108993 22257506 ~ 22259912 (+) False AMCG00013147
TU52939 lncRNA downstream 117844 22266357 ~ 22266636 (+) True G42459
TU52945 lncRNA downstream 152060 22300573 ~ 22304742 (+) True G42464
AMCG00013146 mRNA upstream 236553 21773242 ~ 21911741 (+) True AMCG00013146
AMCG00013129 mRNA upstream 563277 21551172 ~ 21585017 (+) True AMCG00013129
AMCG00013127 mRNA upstream 601238 21545619 ~ 21547056 (+) True AMCG00013127
AMCG00013125 mRNA upstream 661601 21486231 ~ 21486693 (+) True AMCG00013125
AMCG00013142 mRNA upstream 661616 21486231 ~ 21486678 (+) True AMCG00013142
AMCG00013147 mRNA downstream 99984 22248497 ~ 22260816 (+) True AMCG00013147
AMCG00013149 mRNA downstream 127829 22276342 ~ 22292501 (+) True AMCG00013149
AMCG00013152 mRNA downstream 230722 22379235 ~ 22470187 (+) True AMCG00013152
AMCG00013154 mRNA downstream 348880 22497393 ~ 22498928 (+) True AMCG00013154
AMCG00013155 mRNA downstream 364316 22512829 ~ 22514649 (+) True AMCG00013155
TU52772 other upstream 661486 21426660 ~ 21486808 (+) True G42344
TU52771 other upstream 661486 21484907 ~ 21486808 (+) False G42344
TU52773 other upstream 661486 21485321 ~ 21486808 (+) False G42344
TU52756 other upstream 729507 21370843 ~ 21418787 (+) True AMCG00013126
TU52747 other upstream 869566 21269675 ~ 21278728 (+) True G42326
TU52922 other downstream 93916 22242429 ~ 22245790 (+) True G42453
TU53407 other downstream 2598979 24747492 ~ 24749395 (+) True G42846
TU53419 other downstream 2619911 24768424 ~ 24770148 (+) True G42858
TU53706 other downstream 3371654 25520167 ~ 25521681 (+) False AMCG00013236
TU53847 other downstream 4106466 26254979 ~ 26257842 (+) False AMCG00013255

Expression Profile