RNA id: TU52922


Basic Information

Item Value
RNA id TU52922
length 1642
RNA type TUCP
GC content 0.43
exon number 2
gene id G42453
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22242429 ~ 22245790 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAAACTGAATCCCTCCTCACTTTCAAGATAAACATCTCAAGGTGCTCATCAATCCTGCTGCTCAGCAATACAGGCAGGCTGGGAGGGAGATGCAGAGAGTGGGGAGGGCTTTCGTTATTGGCAAATCACTTGAAGCCCACTGGGCTTGAGGATACACAACAGCGCCTTGATAAGCAGATCAAGAGGCTGTAAGGAGGAGGTGGGCGAAATAATCCATCTCCAGACCATGAAGCAGGATCTCTTCCTTCAGGCAATGACTAGGATTCCTTCCAGGCTGCACAAGGAAGCTGTCGTCTGTCAGATGGAGGATTAAATGCAACAGCACAGGAATACAAAGCTAAGAAGTTTCATCACTGCTGTATTTGCTTGATTCTCTTTGAGCCGTGAAATGGAAAGCCAGGCGACCGAAGTGAGCACGGAGAACATTGCTCTCGGGGAACGTTCCCGTTCGGAATCCAATGACTTTCTGACCTTCCAGACGGAGAGCACTGTCTTCAGCCTGTCCCGGAGCGAGTCCCTCTGGACCACAGAGTCCCGCAGTGCCTGGGAGACCTACCGGAAGCCCATCATCGTCATGTCCGCTGGCGGCGCCATATTCGTTTGTGGAATAATCCTGAGCAGCATGTATTTCATAGACTATTATAAAAAAGCCACCAACATCCTGGGCCCAGCATTCTTGTCCCTTGGCCTTATGATCCTAGTGGTTGGACTGGTGTGGGTCCCCATCAttaaggagaaaagaaaacaatcttcaGTCAAAAGGCTTTTTAGCTATTACAGGCCTCCATTTTTTCACTTATGAGGCACCTGCTTGCTTTAAACTTGAGAGTGGAAGTGGAGTTCCTTGCATATTCTACCAGAGATTCACTGTCCCTAATTGGAATGCTAGGAATCTGTCAAGAAAGTTGGGCTGCTGAGAAAAAGACACTACAGAAAACTGACATGGCTGGTTGACATTTCCAAGAGCTGTATAATATGCCTTGCTTGTTGTATTTAAGGTCTGAAATGTAATAATCAAGTCATTACCtttaagattaaaatatgaacattatGGTATTCGGAAAACAACAGCACCCTTATTAGTACTGAGCTGAGAGGGGAACGTGTGGTGAACTTGTTTTTGAAGATATCATCCTTGAAAGACGCCTATGCAATCCCTGTGGACATATCGCTGCGGAGGCCTTATCTGAAACAAACATGGGAGAGTAAATCTGAAGTATAAATGTTGTGATTGTGGAGCTCAGAATAGACATATGAAAATGATAGAGATAATATTGTGCAGTCACATGAATGGCATGAATCTTTGAAGATCCACATGTTACTGTTCATTGCGTACAAATACTGAGGGAGTGAAGATTTGAATGTCTGACCAAAAAGGGTTAGGCGCTGTGGTTGGCTTTGCAATGatcttgttttaaatgctgaaCACATTTATCCATTACCTAAACTCCCCCTTGATAAACCTTTATCCTGTCCCTGACACAAATGTACAATTTCAGAGTgtgctaaatgtttttttttttttttttttttttaatgtagagaaatatttcacaatgtttttggttattttaacacaatcaAAGCAAATGTGTGGCATAATTACCATAAaccaaatttcaaataaaaaaccCAACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52918 lncRNA upstream 92642 22149585 ~ 22149787 (+) True G42449
TU52917 lncRNA upstream 93916 22148294 ~ 22148513 (+) True G42448
TU52783 lncRNA upstream 641461 21528781 ~ 21600968 (+) True G42350
TU52774 lncRNA upstream 733605 21472716 ~ 21508824 (+) True G42345
TU52776 lncRNA upstream 738505 21498973 ~ 21503924 (+) True G42347
TU52926 lncRNA downstream 11716 22257506 ~ 22259912 (+) False AMCG00013147
TU52933 lncRNA downstream 11716 22257506 ~ 22259912 (+) False AMCG00013147
TU52939 lncRNA downstream 20567 22266357 ~ 22266636 (+) True G42459
TU52945 lncRNA downstream 54783 22300573 ~ 22304742 (+) True G42464
TU52982 lncRNA downstream 269074 22514864 ~ 22570081 (+) True G42488
AMCG00013148 mRNA upstream 13933 21930055 ~ 22228496 (+) True AMCG00013148
AMCG00013146 mRNA upstream 330688 21773242 ~ 21911741 (+) True AMCG00013146
AMCG00013129 mRNA upstream 657412 21551172 ~ 21585017 (+) True AMCG00013129
AMCG00013127 mRNA upstream 695373 21545619 ~ 21547056 (+) True AMCG00013127
AMCG00013125 mRNA upstream 755736 21486231 ~ 21486693 (+) True AMCG00013125
AMCG00013147 mRNA downstream 2707 22248497 ~ 22260816 (+) True AMCG00013147
AMCG00013149 mRNA downstream 30552 22276342 ~ 22292501 (+) True AMCG00013149
AMCG00013152 mRNA downstream 133445 22379235 ~ 22470187 (+) True AMCG00013152
AMCG00013154 mRNA downstream 251603 22497393 ~ 22498928 (+) True AMCG00013154
AMCG00013155 mRNA downstream 267039 22512829 ~ 22514649 (+) True AMCG00013155
TU52772 other upstream 755621 21426660 ~ 21486808 (+) True G42344
TU52771 other upstream 755621 21484907 ~ 21486808 (+) False G42344
TU52773 other upstream 755621 21485321 ~ 21486808 (+) False G42344
TU52756 other upstream 823642 21370843 ~ 21418787 (+) True AMCG00013126
TU52747 other upstream 963701 21269675 ~ 21278728 (+) True G42326
TU53407 other downstream 2501702 24747492 ~ 24749395 (+) True G42846
TU53419 other downstream 2522634 24768424 ~ 24770148 (+) True G42858
TU53706 other downstream 3274377 25520167 ~ 25521681 (+) False AMCG00013236
TU53847 other downstream 4009189 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 4279036 26524826 ~ 26540049 (+) True G43263

Expression Profile