RNA id: TU52945


Basic Information

Item Value
RNA id TU52945
length 1699
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G42464
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22300573 ~ 22304742 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTACATTGCATATAACACACATACGTGTCCTAATTTATAgctcaaaaaatgaaaagttttaTTATAAGTGTTATATGATTTCTGAGCCGATGACTGGGAGAGGATGCTGGCTGAATCCAGACATAACGGGGATGCTTGAGTTGATCAATATACCCTGTGGTGCTGAGCCTTTGTGGCAGAAATAACGGTGAAGAAAGGGAAGGGATTGTCATGCTGACAGGGCGTGAAGCATACTTTTTCCGAGGCTGTGGCTATCCGCGTGCCTTGCAGGTTGAGCGCGATGCAGCTTAGCGCTCCTTCGTGGGCCGGGATGTCCACTGGTGGCTTCTCTGTGTTGGCCAGGTCCACTATCTGCACATGGCCAGTGTGGGTGCCGGGAAAGGCTAACAGGGAGTTATTGCTGTTGGGACATAATACACAAAGACCTTTGGGGTTGTAGCAAGTCTCAAACACATGCAGTTGATGAGGGTTGTGGGTAAAGGTGAAGACTTTTATCATGGAATCAAGAACCACCACAATCCGATCTCGCCGAAGTTTTACTGCTTTGACTTCTGTGGAAAACTCTATTTCTATGACCGTCTTCTTCTTCAGATCGTCCCAGATCATCACTTTATTAGGAGGATATTTTGGCTTCTTTCCACCTCCAACAAGAGCTAAGTAGTTACACCTGAACAGCATCTCCACGTGACCAACTCCACCCTCGAGAAACTCTGAAACGACACAAGAGAGCACGTAAGAGTTTAATTGCAGAAAGGAGACACACTAAACGGAGATTACTTGTTAACCCTTCacgacacacatacacaataatcACACCTTATGACAAGTGTCTCAACCAACAGAGGGGACGGACAGACAAGTTCAATTAGacttttcacaaaaacaaggaCAGAAGCATTTTCTTACAATCTTTATCTTGCCTTTCGATACATCAGTGCTAAAACAATCCGCTACATTCTATATTACAAACAAGGTGCACTATGGAAGTCTATCACAAGTTGCTTATATGAAGCATTtgcaggaaaataaacaggGTTGAAAAACAGTTTGGAGCTGGAATTGGGCAACTCTCTTCCTGGAAAGCGGGGGTCTTGCAGGGTTTATATGTGCATACTTTTATAGCTCTAATCTTTAATCACTAAACAGTTTTGAGCACAGAAAGTCTGACCTGTTTAGCACTGAGTTACAGATTATGGTTTTGGAGTGGggctaaaacaaacaaagaagggCTGCCAACTTGTTAAAGCATATAAACTGGCACAGGCCACTCCCAGTAAAGAACAAGATAATGTGTTAATAAGTTACCTGTGCAATGCATATGGAGctattaatgaaaaacacttgcATAGCCTGTAtacctattattattgttattatttttatttttttacacattgcATCTGAGTGCATGGAAGTCCCCTAAACTATAAGTCTCTGTTTTTGCACATCTCCATTTACCATCCCTGGAATTTCTGACTCTAGATCAACCTCCACATGTTGTTCCAAACAATGGAAGAAAAAGATAATTCAAAGCTAGTTAAGATCATGTGTGCATTggtcatacacacacacatacacatttctttTCCATTGGGAATGAAAAACCTTGTTACTGTTCTGGTTTTCCTGTCCAGACCAGATCGCACAAGATAGAGGAAGGAAATACCTTGGGTCTTGTTGTCACAACATTGTGGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52939 lncRNA upstream 33937 22266357 ~ 22266636 (+) True G42459
TU52926 lncRNA upstream 40661 22257506 ~ 22259912 (+) False AMCG00013147
TU52933 lncRNA upstream 40661 22257506 ~ 22259912 (+) False AMCG00013147
TU52918 lncRNA upstream 150786 22149585 ~ 22149787 (+) True G42449
TU52917 lncRNA upstream 152060 22148294 ~ 22148513 (+) True G42448
TU52982 lncRNA downstream 210122 22514864 ~ 22570081 (+) True G42488
TU53014 lncRNA downstream 387190 22691932 ~ 22692216 (+) True G42518
TU53059 lncRNA downstream 557073 22861815 ~ 22862982 (+) True G42554
TU53136 lncRNA downstream 1249930 23554672 ~ 23560660 (+) True G42619
TU53241 lncRNA downstream 1479666 23784408 ~ 23831400 (+) True G42705
AMCG00013149 mRNA upstream 8072 22276342 ~ 22292501 (+) True AMCG00013149
AMCG00013147 mRNA upstream 39757 22248497 ~ 22260816 (+) True AMCG00013147
AMCG00013148 mRNA upstream 72077 21930055 ~ 22228496 (+) True AMCG00013148
AMCG00013146 mRNA upstream 388832 21773242 ~ 21911741 (+) True AMCG00013146
AMCG00013129 mRNA upstream 715556 21551172 ~ 21585017 (+) True AMCG00013129
AMCG00013152 mRNA downstream 74493 22379235 ~ 22470187 (+) True AMCG00013152
AMCG00013154 mRNA downstream 192651 22497393 ~ 22498928 (+) True AMCG00013154
AMCG00013155 mRNA downstream 208087 22512829 ~ 22514649 (+) True AMCG00013155
AMCG00013158 mRNA downstream 344434 22649176 ~ 22655621 (+) True AMCG00013158
AMCG00013161 mRNA downstream 368460 22673202 ~ 22858651 (+) True AMCG00013161
TU52922 other upstream 54783 22242429 ~ 22245790 (+) True G42453
TU52772 other upstream 813765 21426660 ~ 21486808 (+) True G42344
TU52771 other upstream 813765 21484907 ~ 21486808 (+) False G42344
TU52773 other upstream 813765 21485321 ~ 21486808 (+) False G42344
TU52756 other upstream 881786 21370843 ~ 21418787 (+) True AMCG00013126
TU53407 other downstream 2442750 24747492 ~ 24749395 (+) True G42846
TU53419 other downstream 2463682 24768424 ~ 24770148 (+) True G42858
TU53706 other downstream 3215425 25520167 ~ 25521681 (+) False AMCG00013236
TU53847 other downstream 3950237 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 4220084 26524826 ~ 26540049 (+) True G43263

Expression Profile