RNA id: TU52982


Basic Information

Item Value
RNA id TU52982
length 1956
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G42488
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22514864 ~ 22570081 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tGGAACTTACCATTTTCAACTGCCCTGAACACCCTCCCCACCACCAACACAACGACCACCACCTCTCCCACTTTCCTGGTTGTCTCGTTCTAAGGATGCCTTGCCTTTCTGTTCCCCCATCTCTCTGTTTTATACATATTACCTGGACTGAGAACTGCtgtagcattttattattatttttgtttcccctcttttcattttatttgggaCTGCTGCTTCACAAGTACTTATCCTACCTGCCACGTTATTATGCTTGTTCTATACCTGTGAAGAGGTCTGCCATTTGGAGTAACCCCTTCACTGATTCAGAAGCTTAAGTGTACATTGTCTTTATAAGTGTGACCTCTATTTTCAGATGTTAATTGATTATCCCCCCCAGTAATTACAGTGCATAATTTTGagattgtttattattattattttggtttttttaGTTTTCGATGTtgttcttattgtattttagttCTACTGGTGATCTCTGTCCCTTGTCTTATTAAGTGTTAAACATAGCTACATAACATTCAGTTTTTTCTACAcgtgcttgtttgtttcagacCGAGAGTCTAGCTCTCTTACTTCTCCATACCTTTGGATAGAGGAATACTTTAAAAAGAACACAAAgaggtgtttttctttgtctgtttgttagtttgtttttttcggCACTGTCAGTACATGAAGCAATAATCCTATCGTATGCTACGACATGCTGCTTGGATAATTCTTgtagacattaaaaaaaactccctTCACAAGACTTTTCCATGTCGCTAACAGAACCAACAAGTCAGTGATGTATAGCATGATCATGCTCAGTATTAATTTGGAGAGTACTGCTGGTGTGGTGAGAGATGTTCCAAATCTCTAAATACTACTTTTGCTCCGTAAACGGGAGTCTTTTCTTCAAGAACCTGTGCACTGTTGCGTGTTTTACAATCTAAACTGGTGCAATGTTACTACTATGTTCAAATCAAATCTGCTTGATTTTAATGTTGGTTTAGCTTTCAACTAAACTATCTTTGAAATACtcagatattgttttattattattaatattactattattattattatgacaacAATGATGATCAAAATATTTTGGCAtgatttctgtttaaatacacaaatctcaagcaaataagaataaaaaaaacatttgcaatccAGTTAATTCTTCACCATTTATTTCTGAGCATGATTAATTAGAACAATcagcttaaaaatatattttgtcttttttttttgtagctatGTATTTGCCTTCTTTTTAGATGGTTGTAAGATGAATGTAACAGATGTATAATGTAAAGGTGGATGGTGTTGTCCTATACTGTGGTTAATCCAAtcaatttattaatgtttactacagaccaaaagagaaaaaatatataataattataaaagagTTTTAATGTTTATACAAAGCAAGTCTATAGGTTGTTTTTGTACGGTATTTTTCCTATACAAATActgacaatgtattttaaaaggcacaattcaaatatacacacacacatatatatatatatatatatatatatatacacacacacacatatatacatatataaatatatatacacaaacacacacctataGGTCACTAAGTGCTTATAGTAACTGTGAATGACACAatgaagcatggaaagatgtatgctttaaataacaagaagagttagaaaaataaattaatggatcagagaaaaaaacgaaaatatgtgacatcactgaaagagtgaaaatgggtcggacacattgcaagaacagatgaaagatggacaaaagaggCTATCGAATGGATTCCAAGAGATgtaaaaagacctagaagatcaTCACATAagagatgggaagatgaaatgatAAACTTTGTTGctggtgtgacatggaaaagagatgctgtataTCAAAACAAGAGGAAACATCATGGAGAggcctttatccagcagtggatcaata

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04727 GABAergic synapse
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52945 lncRNA upstream 210122 22300573 ~ 22304742 (+) True G42464
TU52939 lncRNA upstream 248228 22266357 ~ 22266636 (+) True G42459
TU52926 lncRNA upstream 254952 22257506 ~ 22259912 (+) False AMCG00013147
TU52933 lncRNA upstream 254952 22257506 ~ 22259912 (+) False AMCG00013147
TU52918 lncRNA upstream 365077 22149585 ~ 22149787 (+) True G42449
TU53014 lncRNA downstream 121851 22691932 ~ 22692216 (+) True G42518
TU53059 lncRNA downstream 291734 22861815 ~ 22862982 (+) True G42554
TU53136 lncRNA downstream 984591 23554672 ~ 23560660 (+) True G42619
TU53241 lncRNA downstream 1214327 23784408 ~ 23831400 (+) True G42705
TU53336 lncRNA downstream 1427713 23997794 ~ 24003887 (+) True G42779
AMCG00013155 mRNA upstream 215 22512829 ~ 22514649 (+) True AMCG00013155
AMCG00013154 mRNA upstream 15936 22497393 ~ 22498928 (+) True AMCG00013154
AMCG00013152 mRNA upstream 44677 22379235 ~ 22470187 (+) True AMCG00013152
AMCG00013149 mRNA upstream 222363 22276342 ~ 22292501 (+) True AMCG00013149
AMCG00013147 mRNA upstream 254048 22248497 ~ 22260816 (+) True AMCG00013147
AMCG00013158 mRNA downstream 79095 22649176 ~ 22655621 (+) True AMCG00013158
AMCG00013161 mRNA downstream 103121 22673202 ~ 22858651 (+) True AMCG00013161
AMCG00013162 mRNA downstream 311827 22881908 ~ 22923730 (+) True AMCG00013162
AMCG00013165 mRNA downstream 831059 23401140 ~ 23410915 (+) True AMCG00013165
AMCG00013166 mRNA downstream 863759 23433840 ~ 23443384 (+) True AMCG00013166
TU52922 other upstream 269074 22242429 ~ 22245790 (+) True G42453
TU52772 other upstream 1028056 21426660 ~ 21486808 (+) True G42344
TU52771 other upstream 1028056 21484907 ~ 21486808 (+) False G42344
TU52773 other upstream 1028056 21485321 ~ 21486808 (+) False G42344
TU52756 other upstream 1096077 21370843 ~ 21418787 (+) True AMCG00013126
TU53407 other downstream 2177411 24747492 ~ 24749395 (+) True G42846
TU53419 other downstream 2198343 24768424 ~ 24770148 (+) True G42858
TU53706 other downstream 2950086 25520167 ~ 25521681 (+) False AMCG00013236
TU53847 other downstream 3684898 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 3954745 26524826 ~ 26540049 (+) True G43263

Expression Profile