RNA id: TU53014



Basic Information


Item Value
RNA id TU53014
length 285
lncRNA type intronic
GC content 0.35
exon number 1
gene id G42518
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22691932 ~ 22692216 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aataagttaagggagtcacgttgtgccgtttaaaatgcatatatactagcacaaatgatgacgataataataacaatacatatttgctatttattgttgcacatggaaacatattcttatgggaacatgcttatctgaatataatgttgtctacacgtttagctcttcctaatatccctgaacagaaacatgtatttattacgctattacaatcatgtaaagcagaaagaataaaacagacacacaagtcctctcctcgtcaggctgtgtcgctcgtagtgtttc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU52982 lncRNA upstream 121851 22514864 ~ 22570081 (+) True G42488
TU52945 lncRNA upstream 387190 22300573 ~ 22304742 (+) True G42464
TU52939 lncRNA upstream 425296 22266357 ~ 22266636 (+) True G42459
TU52926 lncRNA upstream 432020 22257506 ~ 22259912 (+) False AMCG00013147
TU52933 lncRNA upstream 432020 22257506 ~ 22259912 (+) False AMCG00013147
TU53059 lncRNA downstream 169599 22861815 ~ 22862982 (+) True G42554
TU53136 lncRNA downstream 862456 23554672 ~ 23560660 (+) True G42619
TU53241 lncRNA downstream 1092192 23784408 ~ 23831400 (+) True G42705
TU53336 lncRNA downstream 1305578 23997794 ~ 24003887 (+) True G42779
TU53337 lncRNA downstream 1315137 24007353 ~ 24007850 (+) True G42780
AMCG00013158 mRNA upstream 36311 22649176 ~ 22655621 (+) True AMCG00013158
AMCG00013155 mRNA upstream 177283 22512829 ~ 22514649 (+) True AMCG00013155
AMCG00013154 mRNA upstream 193004 22497393 ~ 22498928 (+) True AMCG00013154
AMCG00013152 mRNA upstream 221745 22379235 ~ 22470187 (+) True AMCG00013152
AMCG00013149 mRNA upstream 399431 22276342 ~ 22292501 (+) True AMCG00013149
AMCG00013162 mRNA downstream 189692 22881908 ~ 22923730 (+) True AMCG00013162
AMCG00013165 mRNA downstream 708924 23401140 ~ 23410915 (+) True AMCG00013165
AMCG00013166 mRNA downstream 741624 23433840 ~ 23443384 (+) True AMCG00013166
AMCG00013167 mRNA downstream 839735 23531951 ~ 23540214 (+) True AMCG00013167
AMCG00013171 mRNA downstream 889495 23581711 ~ 23610831 (+) True AMCG00013171
TU52922 other upstream 446142 22242429 ~ 22245790 (+) True G42453
TU52772 other upstream 1205124 21426660 ~ 21486808 (+) True G42344
TU52771 other upstream 1205124 21484907 ~ 21486808 (+) False G42344
TU52773 other upstream 1205124 21485321 ~ 21486808 (+) False G42344
TU52756 other upstream 1273145 21370843 ~ 21418787 (+) True AMCG00013126
TU53407 other downstream 2055276 24747492 ~ 24749395 (+) True G42846
TU53419 other downstream 2076208 24768424 ~ 24770148 (+) True G42858
TU53706 other downstream 2827951 25520167 ~ 25521681 (+) False AMCG00013236
TU53847 other downstream 3562763 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 3832610 26524826 ~ 26540049 (+) True G43263

Expression Profile