RNA id: TU53044


Basic Information

Item Value
RNA id TU53044
length 270
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G42544
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 22574558 ~ 22574827 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtcgctgctcctccatcagagggacggattcacagcggcctggttttgcaataacagctctgggactccggcacggcacggcaggacacggacgcttaagccagcgGAACCGAGGCACGATACGCTGTATGTGTCCAACAgtggctgcgtcccaaatcgcacacttgttccctcgtgAAGGAGCCGAATCGAGCCGTCTGTGCCCTTCAATGCTGCCTTCAGCGGAGTGAACGAAACAGCGCACTgatgcggaagtgttttagcgctgaa

Function

GO:

id name namespace
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52919 lncRNA downstream 424766 22149581 ~ 22149792 (-) True G42450
TU52907 lncRNA downstream 668961 21893624 ~ 21905597 (-) True G42440
TU52822 lncRNA downstream 1125277 21448892 ~ 21449281 (-) False AMCG00013131
TU52830 lncRNA downstream 1146842 21340970 ~ 21427716 (-) True G42382
TU53058 lncRNA upstream 131239 22706066 ~ 22706337 (-) True G42553
TU53062 lncRNA upstream 241329 22816156 ~ 22816369 (-) True G42557
TU53237 lncRNA upstream 1204098 23778925 ~ 23779350 (-) True G42704
TU53286 lncRNA upstream 1253219 23828046 ~ 23839146 (-) False AMCG00013184
TU53294 lncRNA upstream 1270578 23845405 ~ 23847477 (-) False G42749
AMCG00013157 mRNA downstream 2498 22571776 ~ 22572060 (-) True AMCG00013157
AMCG00013156 mRNA downstream 25051 22537159 ~ 22549507 (-) True AMCG00013156
AMCG00013153 mRNA downstream 199198 22370865 ~ 22375360 (-) True AMCG00013153
AMCG00013151 mRNA downstream 207548 22319662 ~ 22367010 (-) True AMCG00013151
AMCG00013150 mRNA downstream 261801 22293328 ~ 22312757 (-) True AMCG00013150
AMCG00013160 mRNA upstream 35775 22610602 ~ 22631301 (-) True AMCG00013160
AMCG00013159 mRNA upstream 69976 22644803 ~ 22645207 (-) True AMCG00013159
AMCG00013163 mRNA upstream 344471 22919298 ~ 22928441 (-) True AMCG00013163
AMCG00013164 mRNA upstream 354922 22929749 ~ 22937784 (-) True AMCG00013164
AMCG00013170 mRNA upstream 897706 23472533 ~ 23483799 (-) True AMCG00013170
TU52819 other downstream 1057381 21336217 ~ 21517177 (-) True G42371
TU52837 other downstream 1059865 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 1159594 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 1198795 21337067 ~ 21375763 (-) True G42381
TU52823 other downstream 1214451 21350660 ~ 21360107 (-) True G42375
TU53293 other upstream 1269256 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 2307292 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 2451049 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 2500566 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 2589156 25163983 ~ 25166758 (-) False AMCG00013223

Expression Profile