RNA id: TU53237


Basic Information

Item Value
RNA id TU53237
length 426
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G42704
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 23778925 ~ 23779350 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tccagaaaaacacatttcaaaaaagttataaattgatttgcatgttaatgagggaaataagtatttgatcccctatcaatcagcaagatttctggctcccaggtgtcttttacacaggtaacgagctgagattaggagcactagggagtgctcctaatctcagctcgttacctgtataaaagacacctgtccacagaagcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtccaaagattgtagacctatacaaggctggaatgggctccctcggtctggggctccatgcaagatctcacctcatggagtttcaatgatcatgagaacggtgaggaatcagcccagaactacacgggaggatcttgttaatgatctcaaggcagctgggaccatagtcccCAAg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53062 lncRNA downstream 962556 22816156 ~ 22816369 (-) True G42557
TU53058 lncRNA downstream 1072588 22706066 ~ 22706337 (-) True G42553
TU53044 lncRNA downstream 1204098 22574558 ~ 22574827 (-) True G42544
TU52919 lncRNA downstream 1629133 22149581 ~ 22149792 (-) True G42450
TU52907 lncRNA downstream 1873328 21893624 ~ 21905597 (-) True G42440
TU53286 lncRNA upstream 48696 23828046 ~ 23839146 (-) False AMCG00013184
TU53294 lncRNA upstream 66055 23845405 ~ 23847477 (-) False G42749
TU53287 lncRNA upstream 122093 23901443 ~ 23901920 (-) True G42743
TU53312 lncRNA upstream 133441 23912791 ~ 23917024 (-) True G42760
TU53359 lncRNA upstream 441301 24220651 ~ 24222738 (-) True G42800
AMCG00013176 mRNA downstream 5892 23758274 ~ 23773033 (-) True AMCG00013176
AMCG00013178 mRNA downstream 22324 23744746 ~ 23756601 (-) True AMCG00013178
AMCG00013177 mRNA downstream 57413 23710700 ~ 23721512 (-) True AMCG00013177
AMCG00013168 mRNA downstream 215589 23554672 ~ 23563336 (-) True AMCG00013168
AMCG00013169 mRNA downstream 286091 23486345 ~ 23492834 (-) True AMCG00013169
AMCG00013184 mRNA upstream 47259 23826609 ~ 23839097 (-) True AMCG00013184
AMCG00013185 mRNA upstream 87290 23866640 ~ 23882268 (-) True AMCG00013185
AMCG00013190 mRNA upstream 123568 23902918 ~ 23912316 (-) True AMCG00013190
AMCG00013191 mRNA upstream 137850 23917200 ~ 23927578 (-) True AMCG00013191
AMCG00013189 mRNA upstream 162361 23941711 ~ 23948688 (-) True AMCG00013189
TU52819 other downstream 2261748 21336217 ~ 21517177 (-) True G42371
TU52837 other downstream 2264232 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 2363961 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 2403162 21337067 ~ 21375763 (-) True G42381
TU52823 other downstream 2418818 21350660 ~ 21360107 (-) True G42375
TU53293 other upstream 64733 23844083 ~ 23847477 (-) True G42749
TU53481 other upstream 1102769 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 1246526 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 1296043 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 1384633 25163983 ~ 25166758 (-) False AMCG00013223

Expression Profile