RNA id: TU53287


Basic Information

Item Value
RNA id TU53287
length 478
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G42743
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 23901443 ~ 23901920 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNGTCTCCCAGATCCCCATTCAGTGGGTGTGACCAACCAGTGAGAGCTGTGTCATTGCAGGAGCAGGCCTGAGGGTCTGGAACCCGCTAGGCTGCTGAAGACCAGGAAATGGCTGGATTTAGCTGGTTGGaaaattcagtaatttagttCAGTTAGTTGCTTACAACCCTGCTGCTTGTGTTTAACATTTGATGGCTACTGTGTCAGTGATCTCTTGCCTAAACCGTGACCAAGCATACAATCAGAATAGCTCAGAAAAGCAAGTATTGCATTTGACATTTCTGATTGGATTTTCCCTTTTGATGCCAACAAGAAAAGACAGTGGTGGTGTATTAATACCAGACATTTGAGCTTCCGAATGCATTAATCTGTTAACaattattgtgttgttattataattgtttgtcGTATACCTCCGTGCTGAAAAGCTTTGCAAGTGATCTTACACTCCCAGTCACGAGAGGCGCAGATGTCCCA

Function

GO:

id name namespace
GO:0030119 AP-type membrane coat adaptor complex cellular_component
GO:0030123 AP-3 adaptor complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53294 lncRNA downstream 53966 23845405 ~ 23847477 (-) False G42749
TU53286 lncRNA downstream 62297 23828046 ~ 23839146 (-) False AMCG00013184
TU53237 lncRNA downstream 122093 23778925 ~ 23779350 (-) True G42704
TU53062 lncRNA downstream 1085074 22816156 ~ 22816369 (-) True G42557
TU53058 lncRNA downstream 1195106 22706066 ~ 22706337 (-) True G42553
TU53312 lncRNA upstream 10871 23912791 ~ 23917024 (-) True G42760
TU53359 lncRNA upstream 318731 24220651 ~ 24222738 (-) True G42800
TU53483 lncRNA upstream 977721 24879641 ~ 24882055 (-) False AMCG00013204
TU53601 lncRNA upstream 1143458 25045378 ~ 25051849 (-) True G42993
TU53604 lncRNA upstream 1177618 25079538 ~ 25082029 (-) False G42993
AMCG00013185 mRNA downstream 19175 23866640 ~ 23882268 (-) True AMCG00013185
AMCG00013184 mRNA downstream 62346 23826609 ~ 23839097 (-) True AMCG00013184
AMCG00013176 mRNA downstream 128410 23758274 ~ 23773033 (-) True AMCG00013176
AMCG00013178 mRNA downstream 144842 23744746 ~ 23756601 (-) True AMCG00013178
AMCG00013177 mRNA downstream 179931 23710700 ~ 23721512 (-) True AMCG00013177
AMCG00013190 mRNA upstream 998 23902918 ~ 23912316 (-) True AMCG00013190
AMCG00013191 mRNA upstream 15280 23917200 ~ 23927578 (-) True AMCG00013191
AMCG00013189 mRNA upstream 39791 23941711 ~ 23948688 (-) True AMCG00013189
AMCG00013192 mRNA upstream 83207 23985127 ~ 23995256 (-) True AMCG00013192
AMCG00013193 mRNA upstream 100806 24002726 ~ 24003841 (-) True AMCG00013193
TU53293 other downstream 53966 23844083 ~ 23847477 (-) True G42749
TU52819 other downstream 2384266 21336217 ~ 21517177 (-) True G42371
TU52837 other downstream 2386750 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 2486479 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 2525680 21337067 ~ 21375763 (-) True G42381
TU53481 other upstream 980199 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 1123956 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 1173473 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 1262063 25163983 ~ 25166758 (-) False AMCG00013223
TU53711 other upstream 1614160 25516080 ~ 25516963 (-) True G43070

Expression Profile