RNA id: TU53312


Basic Information

Item Value
RNA id TU53312
length 3117
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G42760
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 23912791 ~ 23917024 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtcGCACGTGCCAACCTCAGAGAATGTTTGGCGGAAAAAGCAGCAGGGATACTAAACCTGTGAGGCAATGCTGTAACaccctgtgtgtttttgttttagaaactgCTAcgaaaatgttttttctccccTGTTTCTCTCCTATAGTGATGAAAGCAATGTTGGTGCCAATAACTTGGTAGTCACTCAATAGCCTACATTAATTGTTGAAGGATGTTTATTGGGATTTCCACGAAAACTGAAAGGTGCCCAGTAAAATCGGAGCAGTCTTAATGCCGGTCTTAGAGGCTTTACACCTGTCGCATATGCTGAAACTATGCAAGCAGGAATGGACAAAAGTCTGTCTGTATTTTCACTGAAAGGTTTTTTTCACTCTACAGCCAGACCAGGATTTTGAATTTCTGTGATTCAGTATTTTTCAAATCGTTCTTGTCCAAAGTGCCACATTTTAAGGGAATGCAGGTTGGACATGCAGGAGTTGCAGCTCCTTCTACTACCCCGTTCTTCCCTGTTAGCAAACTACTCCTTTCTGTTGGGTatagaaatgcaaaaagaaGCTGTTGGTGAAACGGACTCTGTCATGGCATTACGGTTAACGTTTCAGCGGTGGTCATAGCAGTCTTAATCTTTATGGTGTTGGCTGTAATTTTGTGATGTGTAACCACAGTAAAGTATGCAGTGCACTGGACGATTTTTTGCTCTTCAGTCTTCACCTGCCTGTCTTCACATTGTGGTTAAAGCCCCACATGGAAAAGACAGATGTAGCTGTTACAGTGCCGATTTAACATACTCCCATATTTCGGCCATAACCAAACCAAAAgtcagggttttgttttttttgtttttctgtaaaggTCTTCATACAGATCTAAACCTATTAATACTGTAATCCACCTTCATCAAGCACTTGGTGCCTCTTAAAACAGGAAAACTGTAAATGATGAACCTGTGTATAAAACTATAGTAATGTGTAGCCCCTGTATGTGGGAATGCTGAATTCTGATCATTCGTTTGCTGTAGTCATTTTTGTCCACATGAGTGAGTGGGGATGCACTGTTTGGtggatggttttgtttttgttattttctttaaggcAAATTGAATCAAACATTCTTGAGGCTATTTTTGTCTTAAGTCCACTATGGAGATCTTGTGCCATTCGAAACGGTCTAGATATAGAAATAATTGAACTGATACTTGCTGACTGAAGTGTTTGTAAAGGCAAGGTGTCTTGCCCCTGCGGATGTTGTATTCACTGTCCCAGGACTGTGCTGCAAGAATGGCTCCAGGCAGGACAAACTGCACAAAAGGGTCTCTGTCCTGCAAGAGTGGCCTTGTGATCATGAATCGGACGAGGCcctgaatgttttgtttttcatgttcaaGCAGCTGCATTGTGCAGTGCTAATTTTTATCCTATTGGAGTTTGCCACTTGAAAACTTTTTTGTTCATCATATGAAATCCACGACCTAATTGCTTACTCATCAGGTATAAAGCTAGGTATTACTGAAGAATCATGATCATTTTGTGTCCTCTGATgtcagcttttttattttataattctaAAGTCACAttgtttcaatattaattttaagttGTATACAGGGAAGTCTTTTGTACAGGAGTCTGTGTATTAAGAGCCAGGTCCGATCCAGTTAGGTTTTCTGCagtgacattttgatttaaaagttcTGTTTGGACAGGTCTCTGCATTTTCTCTGTATGGTTATTATGGATGAATGACAACGTAAGGATTTTACCATATATCCTGCATCCCTTTTGTAATTCAATAACTTTTAAAAGCCAAACATGTGACTCTGCTGTCAACTGAGCAATAGCTTCCTGCCAATAAACGTTGTGCCTCCTCAGTGGttattgtacttgttttttgcttttatacCTAGGCTGCAGGCTGTTTGTCTAGTACTGCGCAACTGCAGCTTCTAACCTGCTGTCCTAATTACTCACTGTGGAGACCAGTAAGTATGCAATCCCTTGAGTGAATAATCCAATCATATGGTGTCTGCATCAGCAGAGTTAAGTGAGAAATTTCAAAACTTGCTTAGTGGTTTCGAAACGAGGTGAAGTCTCAGGTAACTCTTCAATAACTTCAGCCACGTAGTGTTGACGGGAATGGAACATCGCTTAATGTCCGGACTATAAAAgcaaattcactttttttttatcgcTAAGTGTAGCTAGTATATTTGGAGGGTCATATATGAGAGAAGAGGCTGGCCACTGTCTTTGTCTTGAAAGTCTGTCAGAGGGGTCACCTGTATGGTGCATGGTACCGAAAGGCAGAGTAGTTTCCCCACAGTGTAGACGGTGAAGCGAACCGATCAGGGCTAGCTTTGCGGTTTCATTCGAGTGCTCATTCCAGGCAACGTCCAGTCTTTCTCTGGCTCCTCCGCCAAGTCCTGTAATTGTGAAGGAACGATATTGTTGACGAGGAAAATATTAATCATGCCGTTGTGGTATAAAACAATACTGTAGCCCTTTTCTCTGTGATAACTATGCAACACAagcaaattgatttttattttttatttaaggatAAGGATCTGAATGTCCTCCATTTGAAAGGAGTGatggtagttttgtttttgaggcaattgtttttttaaataaactttttcaaGTGATTTGccagaaatgaaaaatgcaattacaatACAGTGCCTAAATAGCCAGttatacttattttgttttgtgggttTTGCTGCTTGCCTTAAGTTTGTGCATGCCCATTGAATGAATATCGAGAAACTCTGGAAatgctttgtatgttttttctacACTCTAAAAACACCTGAGCTTGATTTAAAGATGAGTGTGGGCAACAAGCCAGATGCAATTTACCCATTTTTTGTTCTCTACTAAATACTTTCTTTTGAATAACTTGTCCGTTTAGACATGCTTgtcttttgtatatatatgccTTAATGTTAGCCATGACCAGAAAAAAGTGACAACATTTTTACACAACCCTTCTGAACATTTGTTTGGGTAGGATGGGGGAGGGTTGAGTTGTTGTTCACTGTACATTCTCCAGACAAACTGCTCTGCTGTCCTACCCCCTTTTTCCATCTTTTCAATAAAAACCTTTTTgaaacctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53287 lncRNA downstream 10871 23901443 ~ 23901920 (-) True G42743
TU53294 lncRNA downstream 65314 23845405 ~ 23847477 (-) False G42749
TU53286 lncRNA downstream 73645 23828046 ~ 23839146 (-) False AMCG00013184
TU53237 lncRNA downstream 133441 23778925 ~ 23779350 (-) True G42704
TU53062 lncRNA downstream 1096422 22816156 ~ 22816369 (-) True G42557
TU53359 lncRNA upstream 303627 24220651 ~ 24222738 (-) True G42800
TU53483 lncRNA upstream 962617 24879641 ~ 24882055 (-) False AMCG00013204
TU53601 lncRNA upstream 1128354 25045378 ~ 25051849 (-) True G42993
TU53604 lncRNA upstream 1162514 25079538 ~ 25082029 (-) False G42993
TU53605 lncRNA upstream 1162514 25079538 ~ 25082029 (-) False G42993
AMCG00013190 mRNA downstream 475 23902918 ~ 23912316 (-) True AMCG00013190
AMCG00013185 mRNA downstream 30523 23866640 ~ 23882268 (-) True AMCG00013185
AMCG00013184 mRNA downstream 73694 23826609 ~ 23839097 (-) True AMCG00013184
AMCG00013176 mRNA downstream 139758 23758274 ~ 23773033 (-) True AMCG00013176
AMCG00013178 mRNA downstream 156190 23744746 ~ 23756601 (-) True AMCG00013178
AMCG00013191 mRNA upstream 176 23917200 ~ 23927578 (-) True AMCG00013191
AMCG00013189 mRNA upstream 24687 23941711 ~ 23948688 (-) True AMCG00013189
AMCG00013192 mRNA upstream 68103 23985127 ~ 23995256 (-) True AMCG00013192
AMCG00013193 mRNA upstream 85702 24002726 ~ 24003841 (-) True AMCG00013193
AMCG00013194 mRNA upstream 105353 24022377 ~ 24023420 (-) True AMCG00013194
TU53293 other downstream 65314 23844083 ~ 23847477 (-) True G42749
TU52837 other downstream 2398098 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 2497827 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 2537028 21337067 ~ 21375763 (-) True G42381
TU53481 other upstream 965095 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 1108852 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 1158369 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 1246959 25163983 ~ 25166758 (-) False AMCG00013223
TU53711 other upstream 1599056 25516080 ~ 25516963 (-) True G43070

Expression Profile