RNA id: TU53359


Basic Information

Item Value
RNA id TU53359
length 2060
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G42800
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24220651 ~ 24222738 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtaATTGGAAGCTTTTTATTCTCTTTCAAACAGTTCATAGaggtaatacattatttcattttagctGGCATGAAGACAAAATCTTCAACTTCAAATCTGGAACTAAATgccattaatataaaatacataaattaagaaaaacatatttactttattatccATTCAAGGACACTAACCAAATCTTCAGCATTTCTTTTTCACAGACATGTACGCCGTGATATAGTGCTCCGTCTAGGCAAAGTTACTGCACAGTTAGCAGCGTCCAGCAAGTTCAAGTGTGACCAGTCAGTAATATCACAAAGACAACTTTTGTCTAGCATCAAACTCTGTGTATATTTAGggtaactatatattttatatatatatataactctcTCCCATACTGTATCAGTATGGTCAGGGAATACCCATGAGTATCTGACAAGGAAAATGCAGCAGAAATAGCACTGTGTTACCTCATTAAGTGAACAATACCTGTTGAGTTTTTAACACAGCGATGTCAATCTAGCTCTACGGGACTTCCCACAATCCCACCCGGGGACCTCTGTTGTGCTTATCCAGAGAAGGTGAGAGGAAAAGGGATTGCTGAAAGCTATACTAGCTCAAAGAGACACAACGGCATATAGTTAAATACAGGTCTCCCTTGCAAGGAAATGATTCTGTTTATATTGCTCTGTGTTAGGTACAACACCACCGCTGACAGACATGGCTTGGTGTGTTACTTCACGGTCTGGCAGCTCGCCACTATTTCTATCAAAACTAGCATCCCCTCCAGGGCacggagaaaaagaaagaaaagaagaagaaaaaacaaaacacataacaaCAATCCTTTAAATCCCTTATAAGCATTCAAGAATTACCTAGGCATGTAGAGAGTAAGTGGGAGTTCAAGTCTGAGATGATGTTATCTGTCCAgtcttctgtttaaaataatctgcaCTCTGCTTTTTTTTGGTGTTATGTATAAGGCTCTGTTTGTATGGAGTCAAGCTGGTCTCCAAAATAAAATGGCTTATCTTATTTGTTTCCTTCCCTGAAATACTGGGATGCGAAAGTATGATTAAGttctaaatggaaaaaaaaaatcttactctgtgtttataataattttttaaGATTCAATGATTTTCAGGTCTTGCATTGGGAAACAATCTGGCCAAAtataaagtcaaaataaattgattatGACAAACCATTTGTGAAAAGTCTTCTCTAGTTTCAGTCATGAAAGAACATGAAGATTGATTTTGCTTCAATTTTGATGATATGTAAACAAAACTATGGACACTAAAAGGCTTGAGTGGCAAAAAGGGAGAAGTCTCCACAGTATTGTTAAGACAGAGTTCAGTATAAACATCCCTCTCTTCATTGTACATGTACACTTGCCACTGACTGTTATAGACAGCAGTGGAATTGATAGAAAAGGAAGACTTGTTTGCCTGCATACTGCTATATGATGCCATGATTTAGAAGGGAAGATACATCCGAATACAAAAAACTACAGAGATATGTGAGTCATACCAGTCATGTCTAAGGCCATTAAGCAAATAAgatcaccaaaaaaaacaaaataaattaaaatgaaaacattcttgTCCTGGTTTCAGGGAGGGAAGAATGAACGTAGGAATGAGAAAGTTGAAGAATGTTCAGCCAATGAAAACACGGGCAGCTTTCAGAAGCAATGGCTTTAAAACAGAGAGCGCATCATGACAAATATTATGCACGAAAGCTAGCTGCCACAGTTTTTTGgtctggaaaacattttttttttttctaaaagctTTCAGTTTTTTCCCCTGTTTTCTAAATAGTGCACAGCATTGCCGATTAtacaatttagaaaacaaaaacaataaaataagcacaaacattatttttaaccattttcCCAGTAAACTTGATATGAGAACAAAAAAGAGCATAGCAGGACTGATCCCTTTTTTGGATGACAGGTGCAACATCCTGTGCATCAGTAGTGTTGCTCATCAGCCCAATCCAACATCAAGTGACATCATCACTACGAAACCCAGGATGGAGGTCCAGGACGCAAGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53312 lncRNA downstream 303627 23912791 ~ 23917024 (-) True G42760
TU53287 lncRNA downstream 318731 23901443 ~ 23901920 (-) True G42743
TU53294 lncRNA downstream 373174 23845405 ~ 23847477 (-) False G42749
TU53286 lncRNA downstream 381505 23828046 ~ 23839146 (-) False AMCG00013184
TU53237 lncRNA downstream 441301 23778925 ~ 23779350 (-) True G42704
TU53483 lncRNA upstream 656903 24879641 ~ 24882055 (-) False AMCG00013204
TU53601 lncRNA upstream 822640 25045378 ~ 25051849 (-) True G42993
TU53604 lncRNA upstream 856800 25079538 ~ 25082029 (-) False G42993
TU53605 lncRNA upstream 856800 25079538 ~ 25082029 (-) False G42993
TU53608 lncRNA upstream 856800 25079538 ~ 25082029 (-) False G42993
AMCG00013194 mRNA downstream 197231 24022377 ~ 24023420 (-) True AMCG00013194
AMCG00013193 mRNA downstream 216810 24002726 ~ 24003841 (-) True AMCG00013193
AMCG00013192 mRNA downstream 225395 23985127 ~ 23995256 (-) True AMCG00013192
AMCG00013189 mRNA downstream 271963 23941711 ~ 23948688 (-) True AMCG00013189
AMCG00013191 mRNA downstream 293073 23917200 ~ 23927578 (-) True AMCG00013191
AMCG00013199 mRNA upstream 181600 24404338 ~ 24408807 (-) True AMCG00013199
AMCG00013201 mRNA upstream 498821 24721559 ~ 24778233 (-) True AMCG00013201
AMCG00013205 mRNA upstream 578274 24801012 ~ 24830971 (-) True AMCG00013205
AMCG00013206 mRNA upstream 622892 24845630 ~ 24862556 (-) True AMCG00013206
AMCG00013208 mRNA upstream 640437 24863175 ~ 24869166 (-) True AMCG00013208
TU53293 other downstream 373174 23844083 ~ 23847477 (-) True G42749
TU52837 other downstream 2705958 21512084 ~ 21514693 (-) False AMCG00013133
TU52821 other downstream 2805687 21411939 ~ 21414964 (-) False AMCG00013137
TU52829 other downstream 2844888 21337067 ~ 21375763 (-) True G42381
TU53481 other upstream 659381 24882119 ~ 24902428 (-) True AMCG00013204
TU53519 other upstream 803138 25025876 ~ 25029004 (-) False AMCG00013216
TU53623 other upstream 852655 25075393 ~ 25078244 (-) True G43001
TU53641 other upstream 941245 25163983 ~ 25166758 (-) False AMCG00013223
TU53711 other upstream 1293342 25516080 ~ 25516963 (-) True G43070

Expression Profile