RNA id: TU53407


Basic Information

Item Value
RNA id TU53407
length 1904
RNA type TUCP
GC content 0.44
exon number 1
gene id G42846
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24747492 ~ 24749395 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCATAAACCAAATGTTGAATATGATTTAGGGTAATTACGGTTACTCACCAACTCCGGCTCTTTTGGAGGATACAATTCCCACAAACATTCCTTGCTTGAAAACAGATGCTGCACTGGACTCCTCCGAGGACACGGTGAAATGTCGGCTGAGGTAGGCCTGAATCGCTTCCAGAGGCTCATGGGGAATCATGTGTATTTTGTCCTGGCTGAAGGCTGACGGAATGTAGTAGTGCTCCCTGTCAGAGTTGCAGATGATCACCAGCTTGTAGTCCTCCCTGCACTGCATCTTCAGCTtcaaaaaaaactgttcaaattTGTAGCTGACTTCATAGGTCAGCTCATCTGCATACAGCAGGGTGTAAATCTTCTCTCCCCGGTAGCCATCTGTCATGCACCTCCTCAGGAAGAGCTCCACCTGCTCGTACGTTGTGTTGGCTGTGCATAGGAGGACTTCGTCATAAGTGGGCAGCTGCTCTTGACCTTTGCTCATATAGATGCAAATGCAGGACATCAGGATTTCAGCATGTGGGCATACAATGAGGTTTGGGCGCCCCTCCTGCAGACCCTTGGGCAGACTTCTATTGACAATATTTTTCTCCTCTTGCTCATTGGTGGCCAGAAGCTCCAGCAGCCTCCCAAGAGTTCCAATGTCTAAACAATGTGGCAGAAAATGCTTCATGTCTCTCATGTATAAGTTCCACACCAGTTGGAGTTTTTCAGTGTCCTTGGCACAGTCCAGTAAAGCTGGCAGATCATCAATGGAgtaattatcttttttgttcAGTTCCTTGAAGTCCAAGTCCATGCTGGCCTCATCAACAAAAGTCTGAAACTCCATCTCCTCATTTTGCTGAGCATCCTTCTGCAGAACTTCATACTGCCACTCGTGCCACGCATCTCTGATACCTGTGACTTTACAGTTAGGTTTAATGAAAGAAAGCATCATGAGGACTTGTTCATCAAGACACGTGAGCTTTTCCACAGTTAATTTATTACACAGGTAGACGATCTGCTCTGCGGTGTAGTAGTTAAGGTAGTAATGCTGGGATCTTTTGTTGTCCATGAACCCCTTCCAGAACTCCAAACACTTCTCCATTTTCTTGCACAGCTCTGGCAGCTGCTCCACAACTTCTCCAGCGATGATGATCTCCCCCACTGTTTTCTCCAGGTTGAAATCGATGATAATGCCTGCTTCACTGTGCTCACTACAGTTAATATTAGCTTCCCAGTTCCTGAACAGCATGTTCCCAGCAGCATAAAGATCAATAAATGCCACTGCCAGCCTTTGGACATTGGAAAACACCTGCAGAGGGGAAAGATCATTCCAGCACTGAAAACATGcttgatttttgtattgttatggcttttgttagaaatataaagtatattagtttcaattaatattaatatcaatacattttactgttgAGCTATACAACTGAGTATCTGTGTCACTATTCTTTCATCTTAGGTTActaaattttaatattttacattttaccacCTTAAGTCATTAGAAAAAGCAACTGTGGTGTCCAATTGACAAATTCCTGTCTGATGGTGACTTGAAGGTTACAAATTGGGTAGATGGCTAAAAGTTGTAAACAGCAGTTGTAACTGGTGTAGACTCCACTTTTTACGCTGGAATACAAACACAGGGACAACTTCTTAATTCTTCAGGAAGCCAAATGTAAAAGACATCAGCTAATACAAGTCAAAGCAAGACGACAGAAATCACCTCGGCAAAGTGCTCCACTTCGCACTGGCCCTGCTCCCCTTTCCCAGACATCAGCATCAGCTTGTTCTGGAGCTCCTTCAGGTCCTCCAGGGAGTAACAGCGCAGCTCCTGCCCCTCCTCGTGCTCTTCAGGTATCTTCAGCTGGATGACATTGTCCAGACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53406 lncRNA upstream 1738 24745523 ~ 24745754 (+) True G42845
TU53377 lncRNA upstream 336448 24410842 ~ 24411044 (+) True G42816
TU53360 lncRNA upstream 415638 24241269 ~ 24331854 (+) False AMCG00013198
TU53362 lncRNA upstream 415638 24265231 ~ 24331854 (+) False AMCG00013198
TU53337 lncRNA upstream 739642 24007353 ~ 24007850 (+) True G42780
TU53408 lncRNA downstream 297 24749692 ~ 24750256 (+) True G42847
TU53409 lncRNA downstream 913 24750308 ~ 24750565 (+) True G42848
TU53410 lncRNA downstream 1412 24750807 ~ 24751467 (+) True G42849
TU53411 lncRNA downstream 2412 24751807 ~ 24752082 (+) True G42850
TU53416 lncRNA downstream 17861 24767256 ~ 24767458 (+) True G42855
AMCG00013198 mRNA upstream 415658 24326685 ~ 24331834 (+) True AMCG00013198
AMCG00013196 mRNA upstream 526773 24216510 ~ 24220719 (+) True AMCG00013196
AMCG00013197 mRNA upstream 555010 24124906 ~ 24192482 (+) True AMCG00013197
AMCG00013195 mRNA upstream 631234 24022831 ~ 24116258 (+) True AMCG00013195
AMCG00013187 mRNA upstream 763067 23973082 ~ 23984425 (+) True AMCG00013187
AMCG00013200 mRNA downstream 25403 24774798 ~ 24777606 (+) True AMCG00013200
AMCG00013203 mRNA downstream 39230 24788625 ~ 24793416 (+) True AMCG00013203
AMCG00013202 mRNA downstream 48932 24798327 ~ 24799733 (+) True AMCG00013202
AMCG00013209 mRNA downstream 205576 24954971 ~ 24957583 (+) True AMCG00013209
AMCG00013215 mRNA downstream 224322 24973717 ~ 24991262 (+) True AMCG00013215
TU52922 other upstream 2501702 22242429 ~ 22245790 (+) True G42453
TU52772 other upstream 3260684 21426660 ~ 21486808 (+) True G42344
TU52771 other upstream 3260684 21484907 ~ 21486808 (+) False G42344
TU52773 other upstream 3260684 21485321 ~ 21486808 (+) False G42344
TU52756 other upstream 3328705 21370843 ~ 21418787 (+) True AMCG00013126
TU53419 other downstream 19029 24768424 ~ 24770148 (+) True G42858
TU53706 other downstream 770772 25520167 ~ 25521681 (+) False AMCG00013236
TU53847 other downstream 1505584 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 1775431 26524826 ~ 26540049 (+) True G43263
TU54005 other downstream 2058769 26808164 ~ 26811615 (+) True G43309

Expression Profile