RNA id: TU53494


Basic Information

Item Value
RNA id TU53494
length 1955
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G42922
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 24924791 ~ 24926745 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGgtcaaaacaggaaaaaaataatcaaaaaaactaaaaatatttacaatttacaaagaATCACTTCTCTGTTTGAATAGCActtataaatatgatttacataataaaataaatatgtaaaattaccAAAGTAGCTtgagtttctttcttttttctgttaaaaaaatatgttacagaacaaaatacatttagtaataaccttttttttcctgctaGTTATGAAGTAgaagtcttttttatttatatatataaaaaattatatcaACCAACAATGAGGGACGTtctagtaaaaaacaaaatcaaaaatccAGCGtgtcttcatttatttgtatattgaaAGATCTCTTGATGAGAGGAGGGTTGCGAACCTTGTTAAGGACCCTGGGCAGTTCCTCATTCTGGGCAGCACACTgttacaatacagcacagtccAAACGCATCAACTAACCTAATTCACTATATTGACATTTGAATTATACTGAAAGATACCTGGAACTCCAAACAACCAGTCATCaactttgtaaaaataataatagtaataccaataataataaaaagataaagtaagcatttaataaagttttttttaggAAGTCAAAACTCAGAACATTCATTAATAGCTAGTTCCTGTTAGTTTTCCAGAGGAGAGTATACTAACATACAGCAATTTTGTGCTCAGAAAAATTATCTGAACTACAACAGTGGAAAGATGCTAAAAACCTTGAGGTTAATGCACTATAAACATCACTTATAAACTCATTTTAGTCACTAACAATGTacacttttaaagaaaaaacatggtctggttataaatgtttaaatacctATTAATGGTTTGTGTTACTCCTTTATACACTGctgctatttttttaaatctttgacTTCTATAGTTTTCCACATTTTCAGGATGGACTGGCCTTGTTGGGAATTGCTGTGGTTCCAGTGGTCTTGGTCCATTTTTGACCAGTAGGTCTAGCATTAGAGTAGAATTTCAGGGGCACAGACTCTGATTTATGGCTGATTCAAAATAACTGTACACTTCTAAAATGGAAGTCAGTCGGGGGTCTTAATAGCTTCAGACTCCACAGTGTATCACCCTGGAAGGAGGTGAAAAGCATCAGAATCACACCATCAACCCACCAGTCTCCCCATCTGAATGGAAACCAACATGAGCCAAGAGCTCCACCTGAAGGCTTTATCATGACATACAGAATCTGTTTCCTTGCTACTGCCATTCGTCTTTCAGTTTGGTATTGTGTGATgtaggaaaaacacatttaggaAGCACATTTAACTGTGTAGTGCTGTTGTGTTGATGCCTGTCGAGCTTTTGGTCAACTAGGCCACTCTGAAACTTCATTGTTCTTTCTTCACAGAGCCCATGAGATCACCTTTGCAGAGGTGGGCTCCATGactaaaaacagaacagaatggCTGATAACATCAGGATGGTATTGACTTCTCTGGGAATTCCAGTCAGCCATTTCAACagacattttgacatttgtgGACTTACAGCACAGAGGAAGACTAAAGTTTGGAAGTGTGATGCCATGCTATGTCTCCTATAGGTTTGCCTAGAGGAGGAAGGCCCTGTTCTCATCTCTGTAATTTCCAGAGTGGTGTAGCCAACTGTAGGCTAAGCTGCCAGTATGTGTGGGTTTTGTACAAAGGTCATGTTGGGGTTGGCTGGTCGCTGTGATTCTGAGCTTTACTAAACCTCCCTCATCATTACCCTTGGTCAGGGTAAAGTGTGGCCAATATGCCCATCTTGGAGACACGTGCCCTTTGGTCCCTTCTTCCCTTGATGAAAAGACGGACGATCCAGTGATTTTCCCACCaagtttgtctgtgtgtatttcattaaaaagaaaaaaaaacgaggTCTGAGGAATAAAAACACTTTGGCCCACAGTGGACATGGTTTTCTTTTCCACTGACTCTCGGAAGTCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53473 lncRNA upstream 42733 24879764 ~ 24882058 (+) True G42906
TU53418 lncRNA upstream 156551 24768015 ~ 24768240 (+) True G42857
TU53417 lncRNA upstream 157010 24767518 ~ 24767781 (+) True G42856
TU53416 lncRNA upstream 157333 24767256 ~ 24767458 (+) True G42855
TU53411 lncRNA upstream 172709 24751807 ~ 24752082 (+) True G42850
TU53500 lncRNA downstream 64710 24991455 ~ 25016366 (+) True G42925
TU53533 lncRNA downstream 162425 25089170 ~ 25119808 (+) False G42950
TU53534 lncRNA downstream 162425 25089170 ~ 25376099 (+) True G42950
TU53535 lncRNA downstream 162425 25089170 ~ 25091718 (+) False G42950
TU53536 lncRNA downstream 162425 25089170 ~ 25376099 (+) False G42950
AMCG00013202 mRNA upstream 125058 24798327 ~ 24799733 (+) True AMCG00013202
AMCG00013203 mRNA upstream 131375 24788625 ~ 24793416 (+) True AMCG00013203
AMCG00013200 mRNA upstream 147185 24774798 ~ 24777606 (+) True AMCG00013200
AMCG00013198 mRNA upstream 592957 24326685 ~ 24331834 (+) True AMCG00013198
AMCG00013196 mRNA upstream 704072 24216510 ~ 24220719 (+) True AMCG00013196
AMCG00013209 mRNA downstream 28226 24954971 ~ 24957583 (+) True AMCG00013209
AMCG00013215 mRNA downstream 46972 24973717 ~ 24991262 (+) True AMCG00013215
AMCG00013214 mRNA downstream 118637 25045382 ~ 25053636 (+) True AMCG00013214
AMCG00013213 mRNA downstream 152931 25079676 ~ 25081286 (+) True AMCG00013213
AMCG00013219 mRNA downstream 194831 25121576 ~ 25133716 (+) True AMCG00013219
TU53419 other upstream 154643 24768424 ~ 24770148 (+) True G42858
TU53407 other upstream 175396 24747492 ~ 24749395 (+) True G42846
TU52922 other upstream 2679001 22242429 ~ 22245790 (+) True G42453
TU52771 other upstream 3437983 21484907 ~ 21486808 (+) False G42344
TU53706 other downstream 593422 25520167 ~ 25521681 (+) False AMCG00013236
TU53847 other downstream 1328234 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 1598081 26524826 ~ 26540049 (+) True G43263
TU54005 other downstream 1881419 26808164 ~ 26811615 (+) True G43309
TU54155 other downstream 2231557 27158302 ~ 27158721 (+) True G43434

Expression Profile