RNA id: TU53533


Basic Information

Item Value
RNA id TU53533
length 1358
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G42950
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25089170 ~ 25376099 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGTCTCATAGTCTGAGTCTGGGTGTGAGCAGCGGCCGTGTGTCCCAGGAGCGGTTAGAGACATTTCTGTAAAGAGCAGAGCCTGTGCTGTAAGACGAGGGACTTAGACAGAAAGCAGATTTTCGGCCCGTCAGAAAAACTGGTGCAATTCCAGGACTGATCTACACAAAAACACTATCCACTCGAAAGTGTAGGTAGATTAAATCGACTTTTCCTGGTGTTAAGAAAGATGCTTCTGTCAGAATCGAGTTCCCACAATGTTGGTTCCTCTGGGGGGAAGTGGacaaaaaataacatctcaaattaacacttttttttaaaaatttacTTCTTTTTTTATAGTGCATATTGTACAAATTACCAGTGCATCAGTAGCTATCATTGGTGCTGTACAACAGGAAAAGCAGCCATTTagacacaaaatatattcaggTTAAGACATAATGCAGTGGCTTCAGGTGACTGTAGCACACTAGCTTCGACTAAAACAGGTTGGTTTAAGTGATATTTGTTTCTCAGGCATAATTGCAGTCTGCGGATTCATATGAACACCATGAACTGTGTGCTTTTAGAAACCTCTCCTGATAATAAACCAATGTAGAGCATTCACCAATCAACAAGTATCATTCCCTCAGTTAACAACCAACTCCAATTGTCTGTAATACCACAGGGCTATTCCAagagtgattttttttccacactgcGTCAGCAAACATCAAACACCCAGTGCACCAATCTCAGGTTTTGTGTTTACTCTCTGTATGactgaacatggaaaaacaaagaaagaaagaaaactaccTATTTTGGCCTGGTTTGTCAAACTCTTGGCTGGGTGAACACGGACACATCAGCACTACATAACAGAGCAGAATGACTTTGAATGTCCAGCAGTACAGCAGATGACTGACATGCAGCAAAGGCAAAAGTCACAGCAGTAAAGGAAATGCATAAACACGTAACCTCAGTGGtgtaccatttaaaatattgaggTCTGAGCTACGATAAAGTGTAACAGTGCCACaacatggttttcattttaaatgtaattttttgtttgtttgataatAGGTATTCTGCAGAAACAACACAGCAGTTTTATACAATTCCCAGGCTGTTACTCAATACTGTAAGCTTTTTCCTGTCCTGTCTGCTTTTGTTGCTGTAGCTGTGAGGGAGTGTCAGCTTGGAGGACTCACAGTAGAGAGAGGTCCTTGCTCGTGGACGCCTGCAGCTCTGTTGGGTCATGTCTCAACTTGCTTAATAAGGAGTCTTTCTCATTCTGTATTAGATGTTAAGCTTACTTTTAATAAACAACGTCTGACAATCTGATTATGTAAAATGCTTGCTTGTTTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53500 lncRNA upstream 72804 24991455 ~ 25016366 (+) True G42925
TU53494 lncRNA upstream 162425 24924791 ~ 24926745 (+) True G42922
TU53473 lncRNA upstream 207112 24879764 ~ 24882058 (+) True G42906
TU53418 lncRNA upstream 320930 24768015 ~ 24768240 (+) True G42857
TU53417 lncRNA upstream 321389 24767518 ~ 24767781 (+) True G42856
TU53701 lncRNA downstream 388383 25508191 ~ 25511347 (+) True G43062
TU53704 lncRNA downstream 392400 25512208 ~ 25512901 (+) True G43063
TU53705 lncRNA downstream 402670 25522478 ~ 25524992 (+) True G43064
TU53719 lncRNA downstream 468671 25588479 ~ 25592334 (+) True G43078
TU53720 lncRNA downstream 474563 25594371 ~ 25594607 (+) True G43079
AMCG00013213 mRNA upstream 7884 25079676 ~ 25081286 (+) True AMCG00013213
AMCG00013214 mRNA upstream 35534 25045382 ~ 25053636 (+) True AMCG00013214
AMCG00013215 mRNA upstream 97908 24973717 ~ 24991262 (+) True AMCG00013215
AMCG00013209 mRNA upstream 131587 24954971 ~ 24957583 (+) True AMCG00013209
AMCG00013202 mRNA upstream 289437 24798327 ~ 24799733 (+) True AMCG00013202
AMCG00013219 mRNA downstream 1768 25121576 ~ 25133716 (+) True AMCG00013219
AMCG00013222 mRNA downstream 16061 25135869 ~ 25139723 (+) True AMCG00013222
AMCG00013220 mRNA downstream 22161 25141969 ~ 25150662 (+) True AMCG00013220
AMCG00013218 mRNA downstream 33672 25153480 ~ 25160902 (+) True AMCG00013218
AMCG00013221 mRNA downstream 46969 25166777 ~ 25175997 (+) True AMCG00013221
TU53419 other upstream 319022 24768424 ~ 24770148 (+) True G42858
TU53407 other upstream 339775 24747492 ~ 24749395 (+) True G42846
TU52922 other upstream 2843380 22242429 ~ 22245790 (+) True G42453
TU52771 other upstream 3602362 21484907 ~ 21486808 (+) False G42344
TU53706 other downstream 400359 25520167 ~ 25521681 (+) False AMCG00013236
TU53847 other downstream 1135171 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 1405018 26524826 ~ 26540049 (+) True G43263
TU54005 other downstream 1688356 26808164 ~ 26811615 (+) True G43309
TU54155 other downstream 2038494 27158302 ~ 27158721 (+) True G43434

Expression Profile