RNA id: TU53608


Basic Information

Item Value
RNA id TU53608
length 2468
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G42993
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25045378 ~ 25376323 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaagagtggagcagttccatgacctcagctccagAGCataactaacaaaaactgtgcagctccgctccggctccatGCACGGCCAACCCTACCCGGCCGACCCCCATACCCTGCTGCTTAttgcgatttttttttttttttttgcttgttcgGTGGAATGAAGACATTTCAACTTTTTAAGTTATGTTTGATCTGACTGTGCTTTTGTAACAGTTTACTGAGTAACAGAAAGGTCCTGAATGTATGcaagaaaaagacacaaacaactgggtcatttcttaaaaatatatatttagttttccgATATTCATGTTCATTCagaacatgtgtgtgtatatatatatatatatatNNNNacacacacacacacactatatatatttatatatacatcagtAAGGCAAAGCCATAGTCAGTTTCCATAAGCAAAGTCATCAAGAAATCCTGTATCTTGTAGAAATCTCTTCCTCTCAACAATCTTGCGGCTCAGCTGTTCCGGTGGTCCTCCCCTCCGTCGGAGTCCGGGGAAGTGCAGGGTAGTTCAGGGTTGTGCGGCTCGCCCAGTGcagcattacaatatatatgaaattaaattgtaattccACGCCCTCCCTCCATATTACATAGTATATCACTGCTCATCTGGACTCAGGCCAGCCCACACACCTATGCTTCATATTATCTGCTACTTATACTGAAGTAGTGAGGCAGGCGTTTCATCTCTCAAAGTAGGCAAGCATTTCCTCAAAGTCTTTCTGTTTACTCTCTATGAATTCCCGGGTACGTCTCTGGATTTCCTGAATCTCCGGATCCTTCTGGAATTCCAGGTATTCCTCTTCCGTCTTTGAGGAGAACACAATTTGTTAATGGAAAAATACCCAGTAGTTTCAAGCAACCAAACAAAGTATTTTGGAAAGTAGCTCAAATCAAGCATGCACAGTTCAAACTCAAGTTTATcttcataaaacacacaatcctTTCAGAacaacaaattcaattaaagccATGAACTGGACTGCAATGGActaattctgaaaataataacaatcccTTGTGTTTATGTAGTTATTGTCATCCTTATTTGAGCTCTGGCTCCTCCTTTCCCAAACTCCCTCACTGGTAGATGTTTGCTCACTTCATCCATCACTGAATGCACCTCTCACCAAGCTGACATGGGCAGCCATTTGTACAAGCCGCTGATAGATGGAGAAGTGAGGAATTGCTCAACTAATTCAGCTaaaggttaaaatatatatgaaagcCAACCTGATACATAATTACGTCacatgatatacatatattttttaagatacaTTCTGGCTTTTAAGCCtggcgttttttttttgttttttttttttaaacctgaagTAGTGATTTACACATGGACAAGATATGGCACCTGCCTTACCATTGGCTCAATGGATTCTCCCTTTCTGTAGCTTCTGATTGGAGGATACAAGCCTCTCGATTTGAAGAAGTCCTTCACACTGGTAGACACATGATGTAACACCTCGTTTTCATAAGCGTAGACATTGCCCTTGCTGTCGACAACAATGATCAACTGCAGCCCCTCAGCTAAGCTGGGGAAGTTCTCAATATTTCCAATAACAACCATCTTCTCGCTCTCAGGGAGGTACAGCTCCTCCCAGGCCTCAATCATCTCTTTTCTCCCACATAGCACTGTGTCTTCAAGTCCACCAATTGTCAGATCGGACCCCCTTGGGCCACCTACAGGTACTTTCTTATGTCTGTGCTTCTCCACCAATTTAAGGAGTTTCTCCAGGTATTCGCTGGCTGTGANNNNNNNNNNCAATGAGTAAATCATGCTGAATGAGACAGCAGCCTCTACAATTCAATGGCTACACACTCGTATAAAAGTAGCTTAATTATGTCAACATTTGTTTAGATCATTgcaaactttattttctatgtttctgttttcataGGTTTGAGATGCAATAGAAGACCAATTGTGAACTAGAAGATAATTGTGATATTTCTCCACATTCGGTgaaatcaaaactaaaataatttaaatagattaaaaaaataaaaataatttaccaatTTCCTAcacatctttttcattttttatgtggcAGGATTATTTATGCTTATGATTAGGCCTATAGCCATGTACAAGTacaattcacttttttaaagTAGGCAGTGCTGAGACTGTNNNNNNNNNNAGTAATATTAATCcaaaacagttaaataaatctgagttcaaatagaaaaatactcACAGATTGTAAGACTGCAGAAGTCCTCAACACAATCCTTTATTTCATAGTGATTAATGTTGCCATTCCTGTTATTTTTTGACCTGAAAGATTAAAATTGTTaccattttaacttttaaataactatacaaattacttttacacatgcaaaaaacaatgcataaatacatttaaaataaatatgccatTCATAAGTAAATACCTGCACAGAAGCATCACCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53601 lncRNA downstream 27689 25045378 ~ 25051849 (-) True G42993
TU53483 lncRNA downstream 197483 24879641 ~ 24882055 (-) False AMCG00013204
TU53359 lncRNA downstream 856800 24220651 ~ 24222738 (-) True G42800
TU53312 lncRNA downstream 1162514 23912791 ~ 23917024 (-) True G42760
TU53287 lncRNA downstream 1177618 23901443 ~ 23901920 (-) True G42743
TU53637 lncRNA upstream 54747 25136776 ~ 25139743 (-) True G43011
TU53674 lncRNA upstream 207441 25289470 ~ 25351738 (-) True G43040
TU53680 lncRNA upstream 284237 25366266 ~ 25424074 (-) True G43042
TU53682 lncRNA upstream 285569 25367598 ~ 25369063 (-) True G43044
TU53713 lncRNA upstream 436782 25518811 ~ 25519993 (-) True G43072
AMCG00013217 mRNA downstream 47765 25030591 ~ 25031773 (-) True AMCG00013217
AMCG00013216 mRNA downstream 50582 25025738 ~ 25028956 (-) True AMCG00013216
AMCG00013211 mRNA downstream 136092 24927137 ~ 24943446 (-) True AMCG00013211
AMCG00013212 mRNA downstream 158332 24920301 ~ 24921206 (-) True AMCG00013212
AMCG00013210 mRNA downstream 166983 24907121 ~ 24912555 (-) True AMCG00013210
AMCG00013224 mRNA upstream 17322 25099351 ~ 25111435 (-) True AMCG00013224
AMCG00013223 mRNA upstream 80128 25162157 ~ 25166773 (-) True AMCG00013223
AMCG00013235 mRNA upstream 275651 25357680 ~ 25358501 (-) True AMCG00013235
AMCG00013233 mRNA upstream 303710 25385739 ~ 25418578 (-) True AMCG00013233
AMCG00013240 mRNA upstream 411348 25493377 ~ 25504516 (-) True AMCG00013240
TU53623 other downstream 1294 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 50534 25025876 ~ 25029004 (-) False AMCG00013216
TU53481 other downstream 177110 24882119 ~ 24902428 (-) True AMCG00013204
TU53293 other downstream 1232061 23844083 ~ 23847477 (-) True G42749
TU52837 other downstream 3564845 21512084 ~ 21514693 (-) False AMCG00013133
TU53641 other upstream 81954 25163983 ~ 25166758 (-) False AMCG00013223
TU53711 other upstream 434051 25516080 ~ 25516963 (-) True G43070
TU53964 other upstream 1474325 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 2191200 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 2486735 27568764 ~ 27569151 (-) True G43473

Expression Profile