RNA id: TU53637


Basic Information

Item Value
RNA id TU53637
length 2708
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G43011
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25136776 ~ 25139743 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttaaattcatattttaatacatttaatcagtgAATTGGGCCAATGACACAAAGCATTCCagggcattttatttttttatttttttaaaataactagcATTAATGTTCAAATGTACATCAGgaatcaacacaaacaaaaaaatacagggaTGGGAGGGATGAAAGATTTTGAAATGGAACTAAAATCATCAGAAACAGTCCAAGCCAGTAAAGGTGCAAAGAGACACATTCATTTGCACTGTCAGCTTGATCTGTGGCTCTACCAGCGAATGAAGAACAAGTTCTTTGATGAAGGTATGTGGACTATAAGGAAGCCACATAGACTGACACAGAATTATAGGGAAATCAGAGGAGGAGCAGGAAGTGATGTTGATGGACAGCAGGAGGGTAGACAATCCCAAAGCAGGATCTCAGCAGGACAGTAGAGGGCACGGTGACACAGGGAGCAGCATCATAGGAGTATATCTCCAGCAACCTCTCTCTCTACCACAAAGACTGAAATTCAGCATTCCCGAAAACCCAGAGATTCACCCTTCGTAACAGGAGCCAGTCCAGAGCCTGGTCTAAGTTTTTCTGAATCAATCCCTCTGCATGtccataaatgtatttatgagaTTTGGAGCATTTGTGTcaaatgtacattaattaaCAGCAGTGTTGTTCATAAGAATAGGGATACTGTGTGTTGGGGCACAAAGCCAGCAAGGACTAAGATCCTCCCATGTTGTCACAGTTTGGTCATTTCCTTTGGTTTCCCAACATCCATGTACATTTCAGGCTCTTCTTCGAGCTGGGTGGTACACGCTTGGAAAGAGTTGGTTAATGCTGCATGGTATAACCACTGACCAGCTCCTGTGGCTCATTGTTCAGCTCTATCTCCTCTGTCTTCTTACTGGTGGGAAAAAGAGACTAATCAGACACACAAACTATGAAGTCATCCCTACTGAATTTCCAGCCCTGGAAACTTCATAAATGAACATGAGATTGACTATTtattaaagttacattttaagttgAGTCAAGAAGCAGAAAAGCAGAGGGCTGGCAGATATAAGGAATGCCATTGATAACTGTTTGGTTGTGTGATTGATTGATCGACAGTTTTAATACTTCTAATCTCATACTGCTTTTAATTGGACAATAAAAAGAGTTAAACAATGTGCTGagaattcacacacacatttcagtctCTTCATCTTTCTGAATATGGGACTGGGTTGGTAACATACaatgaaagttttaatttttaattacattttttatagaaCATGTATCAAAacttaaatagatttttttgttacattctgaaaagaaaacattcctgATAACTGATAGTGACACAATCTGAAATCACCTGAATCCTTGTGTGAGTGTGGGCACTTACAAATATGTCAGTACTCATTGAGATAGGAACTGTGGTCATTCAATCATAATAAGTGTCACATTGCACATTGTTTTATCGTCATGTGTAACACAGAGACCCTGACAGTCTTCAACTGCTCTGGGCCTGACTGAAATGTTACCAATGTCTCACTCTGCTCCGCTGTGTAGCCTGCTCTACACACTAGACGTGTCTTACTCACCAGGTCTGCCTGTCATTCTGTGATCTCCCTGGAAGACAGAAAAGCTCTGTTGCTGACCTCTGACCCACAGTGACAAGACTCACACAGCGATAACAACCCAACGGTGAGCAGGTGCCACATGGTTCGGTTCTAGTTCTCATGTTAATTAACACAGTTGTGACACTCTGCTGTAGGGCAGAATTAAACCACCCCCTCCTTCACCCATGTCTCTAATTAAACCTTGCCCTGACCCCAGGCACAATCCCCAAATGAGGAAACACTCAAATCTGAAACCATCTGCAACTACAGCCATTTTAGCCAACTAAGCTGTAGCTTTTCCCCAACTGGTGTTGAAGTTTACTACGGATACTTAGACTCAGGTGCCCCTTGTTCCAACACATCTTAACAGGCTTTCAAGACAGTAAGGTGGGGAATGGATAAACTCACTGTATAGAAACCCCCAGATACAGCATCCAGTCAGCAACAACGTCAGGAAGAGGTAGCAGACAAACACTAAAGCAATCACTTCAATGGAAATGTAGTTAAATTCTGTAAAGAGAATGGAATGATGTCTGTCAAAGAGAAAGTCAACACAGACCATAAAAGCACCACAGAGTGAATTAAAGGATGTTCAAATATAATGCCATATAAAACTGGTGGATTTCTGTAGTGCATTGCTACACAAATGAGATCAGTGCCATGGCAttcaaatatatcaatatacaattgcataaacaaaacaacatacatacatacatatatacataaaacaaatataaacttgTATTAACAGTAAgacctctttctctctctcgttctcttaCTTTCACTCCTTACATTTAAActataaagaaaagtaaagattATGGGGTACCTTTCATGTCAATAAAATAAGGTGAAGcctttattgtgtttgtgtcgTTAAAACTGTCGCTGACCTCGCAATGATAGAAGCCCGTGTTCTTTGGGTGAATAGAGGACAGGACGAGACATCTGCCTTGCTCCTGTAATTGGGAGCCATTTAAATACCAGGAATACCTGGGGTGGgatcctctctccacagagcaGTTGAGTATTATCCTTTCAATAATCCAATGTTCATTATGTATCTTTTGAGACTCCAGTGTAATTTGACCCTGCACTGGAA

Function

GO: NA

KEGG:

id description
ko04640 Hematopoietic cell lineage

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53604 lncRNA downstream 54747 25079538 ~ 25082029 (-) False G42993
TU53605 lncRNA downstream 54747 25079538 ~ 25082029 (-) False G42993
TU53608 lncRNA downstream 54747 25079538 ~ 25082029 (-) False G42993
TU53601 lncRNA downstream 84927 25045378 ~ 25051849 (-) True G42993
TU53483 lncRNA downstream 254721 24879641 ~ 24882055 (-) False AMCG00013204
TU53674 lncRNA upstream 149727 25289470 ~ 25351738 (-) True G43040
TU53680 lncRNA upstream 226523 25366266 ~ 25424074 (-) True G43042
TU53682 lncRNA upstream 227855 25367598 ~ 25369063 (-) True G43044
TU53713 lncRNA upstream 379068 25518811 ~ 25519993 (-) True G43072
TU53741 lncRNA upstream 448171 25587914 ~ 25588261 (-) True G43100
AMCG00013224 mRNA downstream 25341 25099351 ~ 25111435 (-) True AMCG00013224
AMCG00013217 mRNA downstream 105003 25030591 ~ 25031773 (-) True AMCG00013217
AMCG00013216 mRNA downstream 107820 25025738 ~ 25028956 (-) True AMCG00013216
AMCG00013211 mRNA downstream 193330 24927137 ~ 24943446 (-) True AMCG00013211
AMCG00013212 mRNA downstream 215570 24920301 ~ 24921206 (-) True AMCG00013212
AMCG00013223 mRNA upstream 22414 25162157 ~ 25166773 (-) True AMCG00013223
AMCG00013235 mRNA upstream 217937 25357680 ~ 25358501 (-) True AMCG00013235
AMCG00013233 mRNA upstream 245996 25385739 ~ 25418578 (-) True AMCG00013233
AMCG00013240 mRNA upstream 353634 25493377 ~ 25504516 (-) True AMCG00013240
AMCG00013238 mRNA upstream 368454 25508197 ~ 25512871 (-) True AMCG00013238
TU53623 other downstream 58532 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 107772 25025876 ~ 25029004 (-) False AMCG00013216
TU53481 other downstream 234348 24882119 ~ 24902428 (-) True AMCG00013204
TU53293 other downstream 1289299 23844083 ~ 23847477 (-) True G42749
TU52837 other downstream 3622083 21512084 ~ 21514693 (-) False AMCG00013133
TU53641 other upstream 24240 25163983 ~ 25166758 (-) False AMCG00013223
TU53711 other upstream 376337 25516080 ~ 25516963 (-) True G43070
TU53964 other upstream 1416611 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 2133486 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 2429021 27568764 ~ 27569151 (-) True G43473

Expression Profile