RNA id: TU53674


Basic Information

Item Value
RNA id TU53674
length 2973
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G43040
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25289470 ~ 25351738 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGacattttaagctttttttatgttttatttattggtttgatCCAGTTCAGCGCTAGATTACATGGCAATGGCAGAAGTCTGAaatcaaaaagacaaaaacaggcACTATCGACTTCTCTTGATATTCCActacacaaacataaaatttaacaatataaaataaacagaaagaaaactatacatttaagtATATACAACTCTGATAAATAGACTAATACTGCTTAGTCatttaagattcttttttttcctcataatgtttgcttttctttagtAACCAGTGCATTGAAATGTGgaacttgttttaaaagaaaagctaaAAACGGTAACAAAATGGTATAAGACAGAACAGCTGTAGACCCACCTGAAAAAAAGTTTGCTTTACAACACATAAAGCTGCTACATGGGAATTCAATTCATTACAAAATCTCTGcggatgcattttttttttttttttaatgtatttaaggaACAGTGGTTTCTGGAaagaattcaatattttttgtttcaactaCAATATAAAGTAACATTTCCACGGTCAACAGGTGAAGCCAGGTGGATCACTTTGGattattgtgtttaataattCAAGGCAATGTAATGCACAGAGAACTGCAGAGGCTGGGGGATAGCCCCCAATCTGTATACATGTTTCCCAGCAGAAGAAATTATAGGTACTGTGTACATCACAATACCCCAGAGTTGTGTTTACACTGGATTTTAGGACTTGATTGTGGACTGCACTGCACAAAGGTGAAGCCATAGGAAAGATGCCAAGTGGGACCATggcatataaaaacacacagatggGGGACTGTCAAGCCAGATACACTAACACAAACATCTGGGTCTTCCTGCTGTATTGTCAGCAAAGGTACagatctatatataaaaacaaaccaacatagggaacagacaaaactgaaaacccAAAACTGAACCTCACGATATTGTTAAACACTTTGGGgaagaaaatgaatggatgaTATAGAAAAACGtggagaaaaatacaatctatCAAAGCACTTTGGAAACAGGGAGAAAAGCCAGATTGGCAAAGAATGGCTTCACCCTGCAGGCTGCCGGGAGCGGCACAGGGACGCTGAACATCTTCTTTCCACCCATAAAGCTCTCCAGCACCAATGTCTGTGTGAAAGAAAACCTTTCATCTGTCCAAATCAATGGGAGACAGGTATTTTTATTCAACTGCATCAGACTGAACAATTTCTGGCTCTTCGGAGACTAGAACAGAGAGTATGGCAGAAAACAAGCACctcaaacctttttttttttttttttaattaaatggtcTCTGTTGATCTGTAAAAACCTACATGTGTCCAGGAATATTCGCACTGATGCAAACCCAGTGCGGCCGGCCCACGAACTGTGACCAGGTACAGGGCTGACCATCTGACAGAGGGGTAAAAAGCACCTGACAGACTGTAAGAGGGAAGGAGTGGCGCAACACACCGTAGCGAGAACACGTTGCTTCATCCCCTCTCCATTTCTACTAAAGAGAGGTCCACAGCCACAAGCACACGAACCatgtcattattaattataaacagAGTTCTATTAAATCATAAAATCTCgtttatgcattttctttgtttgtacaCTGATATTCAAAACCCAACACCCTCCCCAGACAGTCAGTGAGTTAGTGAAGCAGTCTGTGCGGAGAAGCCCAAAATGGCACGGCCCCAGTGCTCAGTGTCAGGGGAAGGCACAATGATGAGTACATAGCTCAGGCAGAGATATGGAGGTGGCGGGGCTAGGGTAGGGTGGTGTGCTGAGGCAATGCAGAGTGACTGGTTTGGTTGGAGAACAGCGAGTCTTTATAAACCGTAGGTCCACATAGGCAGAACAAAACCTGGGAAGGTCACTGTTGCACTCTTTGCCATGATTGGCCGTTCTTCAGTTGTCTTCCTTTTGTGGTCGTCTTTGACTGGCCCACAGACATCATGCAAAAGACAGGAGAAGCACTTCACCACATTGTTTCTGGTGCAGCGTCCAGGGGTTGAATGTGGGCCGATGTTGGTGATCACTTTTGGTGGagatgcaaaattaaaaagacaggGAACAGACCGATTCTCATTTCCCCTCTGGCTCAACCTCTCCTGTTCTTTCATATACTGTCTAACAAATGTCCAGTTTAttctttttccatgtttttgacTCAGCAGCTTCCACAGAAGTGTGTGTAAGGTTTCACTGCACCTGGCTGAAGAGCAAAACCTTTCTCAAGCAGGAGACCGACCCCCTGAAGCACATTTTCACTTCTGCATTTTCAGTGTTAGTAACACTGCAGTTGCACCGACTAACAAGGGATCCCACATCTGCAACAGCATTTAAGAACAAATGTTTGGCATAGATGGCACATTCCCATTCAAAAGCTCTCTAAGAAGCTTTAAGGATCCTATTTAGGGTAAAATGCTTTACAGATATACACAATACACCTTGTCTTCTGCTCATTATGGTAGAAACACATCACTGGGGGCCCTGCGTTTACATATCCCAAATCATTCTCCAGAGAGTAAACTACAGGAAAATGTCCTGTAATTAACAGATtgcaaatgacaaacaaaagcacaattaacaaaagttacattaaacagaaattaaagtTCCTGAAGGTTTAAAATCCTTAAATTCACAATTGCttcttgggaaaaaaaaaaaaaaaaaacctgaaaaagttaaaataaggTATAGTCTCTAAAAAAAATAGATGCAGGTTGCCTATATCTATACACAATAAAGCACAATGAAGAAAGTCtctgatccttttttttttttctacattaagtTAGAAAATTTTGGTTGGGATTCCACATTCAGTCAGACCTGCTGAGTTGAGAATTGatgcgtgtgtgtgcgtgtgtgtgtgtgtgtgtatgtgtgcgtgtgcgcatgtgtgtgaaTGCCTGGAGGTCTGACTCTTTGATGTTGTGCAGTGCGATGCAGCTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53637 lncRNA downstream 149727 25136776 ~ 25139743 (-) True G43011
TU53604 lncRNA downstream 207441 25079538 ~ 25082029 (-) False G42993
TU53605 lncRNA downstream 207441 25079538 ~ 25082029 (-) False G42993
TU53608 lncRNA downstream 207441 25079538 ~ 25082029 (-) False G42993
TU53601 lncRNA downstream 237621 25045378 ~ 25051849 (-) True G42993
TU53680 lncRNA upstream 14528 25366266 ~ 25424074 (-) True G43042
TU53682 lncRNA upstream 15860 25367598 ~ 25369063 (-) True G43044
TU53713 lncRNA upstream 167073 25518811 ~ 25519993 (-) True G43072
TU53741 lncRNA upstream 236176 25587914 ~ 25588261 (-) True G43100
TU53740 lncRNA upstream 236749 25588487 ~ 25592462 (-) False AMCG00013241
AMCG00013223 mRNA downstream 122697 25162157 ~ 25166773 (-) True AMCG00013223
AMCG00013224 mRNA downstream 178035 25099351 ~ 25111435 (-) True AMCG00013224
AMCG00013217 mRNA downstream 257697 25030591 ~ 25031773 (-) True AMCG00013217
AMCG00013216 mRNA downstream 260514 25025738 ~ 25028956 (-) True AMCG00013216
AMCG00013211 mRNA downstream 346024 24927137 ~ 24943446 (-) True AMCG00013211
AMCG00013235 mRNA upstream 5942 25357680 ~ 25358501 (-) True AMCG00013235
AMCG00013233 mRNA upstream 34001 25385739 ~ 25418578 (-) True AMCG00013233
AMCG00013240 mRNA upstream 141639 25493377 ~ 25504516 (-) True AMCG00013240
AMCG00013238 mRNA upstream 156459 25508197 ~ 25512871 (-) True AMCG00013238
AMCG00013239 mRNA upstream 174904 25526642 ~ 25537475 (-) True AMCG00013239
TU53641 other downstream 122712 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 211226 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 260466 25025876 ~ 25029004 (-) False AMCG00013216
TU53481 other downstream 387042 24882119 ~ 24902428 (-) True AMCG00013204
TU53293 other downstream 1441993 23844083 ~ 23847477 (-) True G42749
TU53711 other upstream 164342 25516080 ~ 25516963 (-) True G43070
TU53964 other upstream 1204616 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 1921491 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 2217026 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 2716475 28068213 ~ 28072787 (-) True G43594

Expression Profile