RNA id: TU53680



Basic Information


Item Value
RNA id TU53680
length 188
lncRNA type sense_over
GC content 0.27
exon number 2
gene id G43042
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25366266 ~ 25424074 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tgctctttattataaattattgaaatgttttataaatataaatatgtgcaaagtttctttttttgtttttgttattgttttttgtttgtttcagatctTCAAGCTTGTATCACCAGTCATCAGGCTGGACATTAAGGTGGAATCTTTATAAAAGACACAcgcacaacaaaaaaaaaaaaagTTTTTGC

Function


GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0052547 regulation of peptidase activity biological_process
GO:0051336 regulation of hydrolase activity biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU53674 lncRNA downstream 14528 25289470 ~ 25351738 (-) True G43040
TU53637 lncRNA downstream 226523 25136776 ~ 25139743 (-) True G43011
TU53604 lncRNA downstream 284237 25079538 ~ 25082029 (-) False G42993
TU53605 lncRNA downstream 284237 25079538 ~ 25082029 (-) False G42993
TU53608 lncRNA downstream 284237 25079538 ~ 25082029 (-) False G42993
TU53713 lncRNA upstream 94737 25518811 ~ 25519993 (-) True G43072
TU53741 lncRNA upstream 163840 25587914 ~ 25588261 (-) True G43100
TU53740 lncRNA upstream 164413 25588487 ~ 25592462 (-) False AMCG00013241
TU53777 lncRNA upstream 352300 25776374 ~ 25777679 (-) False AMCG00013245
TU53779 lncRNA upstream 352300 25776374 ~ 25777723 (-) True AMCG00013245
AMCG00013235 mRNA downstream 7765 25357680 ~ 25358501 (-) True AMCG00013235
AMCG00013223 mRNA downstream 199493 25162157 ~ 25166773 (-) True AMCG00013223
AMCG00013224 mRNA downstream 254831 25099351 ~ 25111435 (-) True AMCG00013224
AMCG00013217 mRNA downstream 334493 25030591 ~ 25031773 (-) True AMCG00013217
AMCG00013216 mRNA downstream 337310 25025738 ~ 25028956 (-) True AMCG00013216
AMCG00013240 mRNA upstream 69303 25493377 ~ 25504516 (-) True AMCG00013240
AMCG00013238 mRNA upstream 84123 25508197 ~ 25512871 (-) True AMCG00013238
AMCG00013239 mRNA upstream 102568 25526642 ~ 25537475 (-) True AMCG00013239
AMCG00013241 mRNA upstream 168385 25592459 ~ 25628252 (-) True AMCG00013241
AMCG00013242 mRNA upstream 261395 25685469 ~ 25685725 (-) True AMCG00013242
TU53641 other downstream 199508 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 288022 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 337262 25025876 ~ 25029004 (-) False AMCG00013216
TU53481 other downstream 463838 24882119 ~ 24902428 (-) True AMCG00013204
TU53293 other downstream 1518789 23844083 ~ 23847477 (-) True G42749
TU53711 other upstream 92006 25516080 ~ 25516963 (-) True G43070
TU53964 other upstream 1132280 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 1849155 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 2144690 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 2644139 28068213 ~ 28072787 (-) True G43594

Expression Profile