RNA id: TU53682


Basic Information

Item Value
RNA id TU53682
length 315
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G43044
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25367598 ~ 25369063 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATAGCAAACTTGGTACCAAAGaggtaatatttttttctgggaCATGggttcactttttaaattcatCATGAGATGTGTCATTACCATGTTATGTGTGTCAATGTTAATAGGTCACAATTGACACACaacttaaatgcatttaatattgtttacagGGTGTGTATTGTATTGGACCCGCTTTATTGTGCCAGCACAGGTGAGAAAAGGTGAGCATCCTGACGAAGCAAAGTGGACAAGGCATCCTGTGAAGATTTTCACAAATACAGGNNNNNNNNGAGAATGAACACATCCCTGAGAAGATCTAATGCTCAAGA

Function

GO:

id name namespace
GO:0044422 obsolete organelle part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53674 lncRNA downstream 15860 25289470 ~ 25351738 (-) True G43040
TU53637 lncRNA downstream 227855 25136776 ~ 25139743 (-) True G43011
TU53604 lncRNA downstream 285569 25079538 ~ 25082029 (-) False G42993
TU53605 lncRNA downstream 285569 25079538 ~ 25082029 (-) False G42993
TU53608 lncRNA downstream 285569 25079538 ~ 25082029 (-) False G42993
TU53713 lncRNA upstream 149748 25518811 ~ 25519993 (-) True G43072
TU53741 lncRNA upstream 218851 25587914 ~ 25588261 (-) True G43100
TU53740 lncRNA upstream 219424 25588487 ~ 25592462 (-) False AMCG00013241
TU53777 lncRNA upstream 407311 25776374 ~ 25777679 (-) False AMCG00013245
TU53779 lncRNA upstream 407311 25776374 ~ 25777723 (-) True AMCG00013245
AMCG00013235 mRNA downstream 9097 25357680 ~ 25358501 (-) True AMCG00013235
AMCG00013223 mRNA downstream 200825 25162157 ~ 25166773 (-) True AMCG00013223
AMCG00013224 mRNA downstream 256163 25099351 ~ 25111435 (-) True AMCG00013224
AMCG00013217 mRNA downstream 335825 25030591 ~ 25031773 (-) True AMCG00013217
AMCG00013216 mRNA downstream 338642 25025738 ~ 25028956 (-) True AMCG00013216
AMCG00013233 mRNA upstream 16676 25385739 ~ 25418578 (-) True AMCG00013233
AMCG00013240 mRNA upstream 124314 25493377 ~ 25504516 (-) True AMCG00013240
AMCG00013238 mRNA upstream 139134 25508197 ~ 25512871 (-) True AMCG00013238
AMCG00013239 mRNA upstream 157579 25526642 ~ 25537475 (-) True AMCG00013239
AMCG00013241 mRNA upstream 223396 25592459 ~ 25628252 (-) True AMCG00013241
TU53641 other downstream 200840 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 289354 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 338594 25025876 ~ 25029004 (-) False AMCG00013216
TU53481 other downstream 465170 24882119 ~ 24902428 (-) True AMCG00013204
TU53293 other downstream 1520121 23844083 ~ 23847477 (-) True G42749
TU53711 other upstream 147017 25516080 ~ 25516963 (-) True G43070
TU53964 other upstream 1187291 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 1904166 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 2199701 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 2699150 28068213 ~ 28072787 (-) True G43594

Expression Profile