RNA id: TU53705


Basic Information

Item Value
RNA id TU53705
length 2515
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G43064
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25522478 ~ 25524992 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATTTAGCTCTGTGAATAAGTACATTGACATCTTCATAATCGCCAACCAACCTTAGGTTACATGTATGTTAAAAGCAACAGATTTAGAGTGGGGTGGAAATTCAAAATAAGAATGACCTGTTCTGGGTTAATACCAGGGTCTTTACAAAAACTGAAGCCAGTCACTCGTTATAGGATGCTCCTCATTTTGAAGTCGACCTGTGTTTCAGccagttgatttattttcagcaggGTGTTGGTATTGGTTACAGACCAGCTTAGGTGAAACAAGGTCTCTTATACTAATTAACAGTTAAATTGATGGCACTCTGGATACTTCTGCTGTTGCTGCAACGGATGTGTGTTTTGGTCCATCTCAATTGCTGCTGGGTGTTCTATGTTTTCTAAGTAGGGGATAGGTATTGCTAGGTTAATGTAAGGAGTCTGTTTGCCATGGGAGATGCTTCATGTCCAGCCACTGGGGATATCTAGGTAATTTGTGGCCCAGCATGATACCTCAGATCTTGCACAGTGTTGATGAGGCCGAGGCTGGAGTGCAAAGGGTGAATTTTATCCAGCCCTTAACAGAACAGTCTGAAGCGACAGACCAGAAATTATAGAGATGACAGCTGCTTGGACTGGCACAGAGAGAGCGAAATAACTCATTCCTGCCTGGACAGGTATGAGTGCAGAGCAAGAACAGTGAAAATAAGAGATGCCGAGGGAGCAATtcacagagctgtatattgacCCTTTACCAGAAATCAGTGATAGAAATAATAAGAATGAAATGAACGTTTTCTTGAAACTTTGAATCAAAGGGACTCTGCAGCTTCAGTAGCATCAAGGTAAAATATGCCATGTTATTTATAGTTGATCCAACAGTAGACTGAAATTGGTTTAATCCAGAAAATggcacacatttttgtgtttctcttgaCATCcagatgatatatatatattagaagcTGTCATATCTCTATGTGCAGATTTTGTGTATTTCCACATGGGTGGCTTCTCTGTTGTTGTGAAACCTGTCTAACAACCGCATTTGATGTGTCCCAGCCAAAGTGTAATCTGCACTTTACAAGCAGCTTTGTAGAATTCAGAAAAGGACTGTTGGTCCCCTCCTACGTGTATTGCTGTCTGCATGTCCCGACTTGCAGAGATAAGCCGGGTAGTGCAGAATGCAGTGTTGCAGGTTCCACATGGCAGGTCCACCCATCTTTGTGGGGCgactcctgcagcagctcctgaGAAAACTAGGCTGCCTTGTATCTCGGCCTGCTGGTCCAGCCAGGACCGTGCTGTGACATGTTCTAGGGCCCTTTCACGAGCCGTATCGACACGAACTAGTGCGTTCTAATGTAATCGGTGTCCTCTTAGTCTGCTCGTGTTTGTTTCAAGACAGCAGGCATTGCGGGTGGTCGCCCCTGCCATTTGCAAGAACATTTGCCTAGTGAAGATTCCCTTTCAGAGTTGTGCTTTAAACTGAtgtgggacagtgccctgtctaaaTGCTagatatattatttgtattactgctgCAGCAGGACTGTGTAAATGATGTGCATTTCAGCTGTCTGTATTGCTCTGGGTAGGCCAGGTTTACTTCAGTGTCTGTGCAGCTGGTTATAGGATAAACAGAACTCTCTTTTATGGTCATATAGAGGTCAAATGACCAAGAAGAATGTGATAAGGTTTGGGGCACCTCGCTGACATCATGGGGTTGCCTGGCAACCAAAGAAATCTCCTGTATGATagtatatactttaaaaaaaactccagATGAGCCTTCCCGACTGGCCGCCTCCAGAGCTAAATAAACTATGTTTGGTATTATTCTACTTGAATCGGGCCCTGAGTGTTCCTTGTCAGCCTATCTATTGAGAGACAAATATTCTTCCCGTCAAAACTATGAATgtctttttacatttccttgAAGATGTTTGTTTATGCGACGAATCTGTGAACATTACACTCTCAATTGCTCACTTGATATACCTGAGATTATAACTACCTCAGAAGGGGGGCTGAAATGGTGACAGGCTTCTAACACATCTGACTCCTCTGTTTTCATGTTTCCTtgtgactttaaaataaatctcaatgTGTTCCAAGTCAAGgcctgttttagttttttcttacaGTCTCTATTTGAAATCTGACAGGCATTACTATTTCCCCCCTGTACTTTTTCTCAAAGGACAATAACACGCCTGTAGTGTTTTTTTCCAGCCAGTGGTTATTCCAAGCTCGTCTCGTAATCATCTTGACACATTAATGGGCATTCCTCTGCTTTAGGGGAAATGGGAAAACCAGGCTGAGGTAAATTATAGTCCAGAATTAAAAAGCGAGAGCCCCTCCCTGCCTCCTAATCTGTGACCTTCTATTCATGTGCTCACCGATCCCTCCCTCACCCTCTGGAAGAGATTAGTATGCCAAGACTGTATGGTAAATCTGCAATTTACACAGCTCACTGTAGGCTTAAGATGTACCTTTACTGATATTTTTGAAGGCTATTCCCTTATTCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53704 lncRNA upstream 9577 25512208 ~ 25512901 (+) True G43063
TU53701 lncRNA upstream 11131 25508191 ~ 25511347 (+) True G43062
TU53534 lncRNA upstream 146379 25089170 ~ 25376099 (+) True G42950
TU53536 lncRNA upstream 146379 25089170 ~ 25376099 (+) False G42950
TU53533 lncRNA upstream 402670 25089170 ~ 25119808 (+) False G42950
TU53719 lncRNA downstream 63487 25588479 ~ 25592334 (+) True G43078
TU53720 lncRNA downstream 69379 25594371 ~ 25594607 (+) True G43079
TU53721 lncRNA downstream 69705 25594697 ~ 25595941 (+) True G43080
TU53722 lncRNA downstream 75821 25600813 ~ 25601177 (+) True G43081
TU53723 lncRNA downstream 79006 25603998 ~ 25604238 (+) True G43082
AMCG00013236 mRNA upstream 958 25513353 ~ 25521520 (+) True AMCG00013236
AMCG00013232 mRNA upstream 36858 25479858 ~ 25485620 (+) True AMCG00013232
AMCG00013234 mRNA upstream 98494 25421661 ~ 25423984 (+) True AMCG00013234
AMCG00013229 mRNA upstream 138006 25375516 ~ 25384472 (+) True AMCG00013229
AMCG00013231 mRNA upstream 155932 25357317 ~ 25366546 (+) True AMCG00013231
AMCG00013237 mRNA downstream 26603 25551595 ~ 25554794 (+) True AMCG00013237
AMCG00013243 mRNA downstream 221673 25746665 ~ 25775438 (+) True AMCG00013243
AMCG00013244 mRNA downstream 252920 25777912 ~ 25784972 (+) True AMCG00013244
AMCG00013248 mRNA downstream 268413 25793405 ~ 25796522 (+) False AMCG00013248
AMCG00013251 mRNA downstream 630763 26155755 ~ 26161064 (+) False AMCG00013251
TU53706 other upstream 797 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 752330 24768424 ~ 24770148 (+) True G42858
TU53407 other upstream 773083 24747492 ~ 24749395 (+) True G42846
TU52922 other upstream 3276688 22242429 ~ 22245790 (+) True G42453
TU52771 other upstream 4035670 21484907 ~ 21486808 (+) False G42344
TU53847 other downstream 729987 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 999834 26524826 ~ 26540049 (+) True G43263
TU54005 other downstream 1283172 26808164 ~ 26811615 (+) True G43309
TU54155 other downstream 1633310 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 1860673 27385665 ~ 27415286 (+) True AMCG00013298

Expression Profile