RNA id: TU53719


Basic Information

Item Value
RNA id TU53719
length 3856
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G43078
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25588479 ~ 25592334 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tattttaatatttacttaaCAACTCTGAGAAATATCGCATATTAGGTACACATTTTTAGACCTTACCTCTTTTATTATCGTAAATGATAGTGGATTTAAATAGAGGGCAAAAGGATAGACGGTCCTGCGTCCTCCCTGCCCCTTCCTGCGGCCAAtcagccattttaaaatgctgtctaACTGCTGAACATTAATGCAATTCTATACACCATAGTAGTATTGCACCTGCGCCTAGGAGAGGCCTGTCTCTTAATGACATCACTTCCCCTTCCTTGTGTGTGCGCACATCACACCCACGCACGCTTTTGCTCGTGCTTGCTGACCTTGACATTttcaaagtcttttttttcctgttctgaACCAGAAACATTTTGACCTTCATATGAACAGGATTCATGAACGAGTCGGTCACAACTGAGATGCGAATACACTTCGGGAATCAAGTGCATTCGAGAAACTCCATCAACTATAAGGCTTCCGAGGTGCCACGTGGCTCCAGGATCTCAAACGAGCTCGGAGAAGATCAGTTCATAcacgtttgtttttttacacccATGTCTTGGTACATTCACATCCTTTTGACCAGTGCCTTGCCTTTAAGAGAAATCAGACTTCAagtcccacaatgcactgtgagaagtaaaaaattaaataatacgcAGACATTCACACGCACATCAAACTGACATTGATGTTTGCACATTGTCAAGCTGTTCTTCAGATCCTACAGCCATGTGGAAGCTCTTTCAGGTTCCTGGATTTACAGTGTTTCTTGTATGGTACAGAAATATACAGCAAGCggtaacattatatacagtatagacaGAAAGTCAAGCCTACATGGAACAATCTAGTAAACCTATCACCGAACAAAGAGCCGTATAATTCAGTAGATAGTACGGATGTTGCCGAGTTACTATCAGTGATTTAACATAGCTAAGACTCAGGCGATGGTGACACTTTTAAGGTTTGATAATGCTTTGACGCCTAGTATCACTAGAAATCCTCACCAGAAACTtggttatattattaattaatattaaatactaaATTGTATGACCCAATATCTCTATAACCACCTTAATATTTCCCCTTAAGTAGCTATTCTGTAGTGGTCTTCTACACAAGTATTTAGattctttagttttctttgtATCTGGAGATGAAAAGCGATCAGAatttatataatgaattaaGTCTTTGCGTTATAAACTTCAAGTTCGAAACATCattagaagtttttttttttttaagaaacactttCTAGAAGCACAAGTCAAATAGATCCCAGTAACCATGAGAAGCAATCCCATATTTAGTACacaatgaacattttaaaaaacagacagtatataaaaactatgagacttaaaaaaaaaatatatatatatattcaaaacaacTAAAATCAAACTGCTTAGATGCTTACAGCGTAGCAATTTgtcttttaatgaaatgcaacccaaggcaataaaataaagataaaaaacttttcaattaaaaagattCCATACTTATTATTTCAAcaagcattaaaacaatatcataACACAACTCCCTGGGTCACAGCACCTCGGGGTCGTGATCTGGTGGTGTAATGATGTCACTTCCTGACATTTGCCAATCGATCTGTTTGTTAGAGGAAAGGAAGGCAGGTCTTCCTGTACTGTATCAATGACCCGGAAGAGGTGTAAAGAATTGTTGTGTTACATTACTGCCATCTTTCTGATGATGTCCAGAGAACAGttgtaatcatatatatataagaaaagagctgtgttttaatgttttgtttattaatgctAAGGACTTGAGACGCAAGAAGTCTGAGCAACACAATACTTGACTAGAGCAGCAGGGATTTGATCACTGTGCACGGATAATGCTTCAAGAAACCACACAAGTGGCCATGTGGGGTGCCTTAATTAATCAACAATCAGGGAATTGGTATTTTATGTTTGGATCTCATTGCACAGGATAGGGAAGAAAGTGACACCATGTACATTGCCCCAGTGTCCTTGAAAGCTATTGGTTTTGCAGTGTAACAAGAGCAttaacaaagcaaagaaaaaacaatgaagaaaatctatcagaaaagaaacatttaccTTTAGCAAGATGGCGAAATGTACAATTCATACAGGCTTGCATATTGAACAGCAACAATAACACggacaaaaatgtatttggcaaaagcaaaaacatgacATGCAACATTTTGATTGAGCTTCTCAAACTGCCTTCTTGTGTTCGTCTGATTGTCCTTCACAGGTAACTTGAGCCAGGCTGTGCAGGGCCTGCAAGTGCTtgaggtgtgtgtctgtgtgcacgTGGACCTGTGACACAgctatacacactcacacagacaacaacacGGTCGTTTCACTTATTCCAAACTACACTGGCCAATTCGATTGCAGGGTCCCGGACAAAGGTTTCTGATTTGATTTTcatatattcagaaaacaaaacaaaatttccAAAGGaaatatcattaaaacacaaaacctttAAAGGTGCTTTGGTTTTTGAAgccagatatatttatatacatcaaTTCACTATCAGGGTCAGATAAACAAGAAATTACAGCCTAACAAAGCATGTGGAACTGCAGCAGCCACACTCCCCTCATTTTAAAAGGATCAATAAGTCATAAGAAACTAAGTTTCGTTTAGTATTTTATCAATAAGCAATAAACAGCGCAAGGGGCTGAATCAGGAGAATAGTCccttaaaacatttgtttgaaagAAGTAGTTTAACACTTCACATAAAAAGAAAGCCATACAAATCTGTAATTGACGGACTCAGCGGCAATATGCCAAACTAGCAGAAGGTAGATACTGCTGGAGGGTTTAGGTGCGGAAGTAACGAATACAGTTTTctattccttttctttcctttgatattttttttatttcctttttagaaTAAAGCCTCTACAAAACTAATCGCAAATCTTAAAAGTCAGGATTGCACATGGTTAAAGAACCATTCTGAAAAAAGAAGAATTGACACAGACATATATTAGTGTTCgatctgaagatacaaaatatatagaacGATAGCTCCTGACTGCTGAGGGGGTAATCTTAAAaccagatttggagaggttagTTCCTTATCTTCCATCTCTGTGTCCCTCCGGTGACCTACCGTTCCCGTGTCATGTGACATGAGCACACTCTCCACAGCTGTGCGCCTGGGTGGAAACATGTCCACAGTGCACCACCGCCCAGCCCAGTGCAGTACAGCCCCCTGGGCGTGGACAGTGGGTGCGCAGGCCACAATGAGAAGGGCAGGCCCGAGGGGTGCCCACTGAGTCAGGAGAGGAACATCTTGAAATGTACCTCACCTTTTCGCAAGCACTTACTGAGAAAGACTAActcaaatagaaaataacatcAGTGATCGAGCTCTTCCTATTTCTGGGTCAGAGCCATGGCCTGTTTTTAGATTGATTTTGGATGTTTATGTTCCCAGTGGCATGTTGTACACCTCCCGAAACAGCACGGCCATTTCAAAACcaagagaataagaaaataagaaagttttgttttctttgcttttcatgatttttttaagTGAGGCGGTTTAAAAGAGACAGGCCAAATGACCTACTTTTTTCTTGATAGGGGAACTCCTCTCCATTAAATAAACCTTCTCTTCTGTCCCCGAATCTGTGTACAGCAACTCCCTTGTCTCAGCAGGACTTGTACAGTGCAGGGTTCATACTGTAGTTTTGTgggtttttttgtgttttatttttgtttttatttttattttttaagaaaggcGAAATAAAAAGTCATAAATCTTtcgaaaaaagaaagaaaaaacaactttgtgAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53705 lncRNA upstream 63487 25522478 ~ 25524992 (+) True G43064
TU53704 lncRNA upstream 75578 25512208 ~ 25512901 (+) True G43063
TU53701 lncRNA upstream 77132 25508191 ~ 25511347 (+) True G43062
TU53534 lncRNA upstream 212380 25089170 ~ 25376099 (+) True G42950
TU53720 lncRNA downstream 2037 25594371 ~ 25594607 (+) True G43079
TU53721 lncRNA downstream 2363 25594697 ~ 25595941 (+) True G43080
TU53722 lncRNA downstream 8479 25600813 ~ 25601177 (+) True G43081
TU53723 lncRNA downstream 11664 25603998 ~ 25604238 (+) True G43082
TU53725 lncRNA downstream 27276 25619610 ~ 25620005 (+) True G43084
AMCG00013237 mRNA upstream 33685 25551595 ~ 25554794 (+) True AMCG00013237
AMCG00013236 mRNA upstream 66959 25513353 ~ 25521520 (+) True AMCG00013236
AMCG00013232 mRNA upstream 102859 25479858 ~ 25485620 (+) True AMCG00013232
AMCG00013234 mRNA upstream 164495 25421661 ~ 25423984 (+) True AMCG00013234
AMCG00013229 mRNA upstream 204007 25375516 ~ 25384472 (+) True AMCG00013229
AMCG00013243 mRNA downstream 154331 25746665 ~ 25775438 (+) True AMCG00013243
AMCG00013244 mRNA downstream 185578 25777912 ~ 25784972 (+) True AMCG00013244
AMCG00013248 mRNA downstream 201071 25793405 ~ 25796522 (+) False AMCG00013248
AMCG00013251 mRNA downstream 563421 26155755 ~ 26161064 (+) False AMCG00013251
AMCG00013255 mRNA downstream 662640 26254974 ~ 26258950 (+) True AMCG00013255
TU53706 other upstream 66798 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 818331 24768424 ~ 24770148 (+) True G42858
TU53407 other upstream 839084 24747492 ~ 24749395 (+) True G42846
TU52922 other upstream 3342689 22242429 ~ 22245790 (+) True G42453
TU52773 other upstream 4101671 21485321 ~ 21486808 (+) False G42344
TU53847 other downstream 662645 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 932492 26524826 ~ 26540049 (+) True G43263
TU54005 other downstream 1215830 26808164 ~ 26811615 (+) True G43309
TU54155 other downstream 1565968 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 1793331 27385665 ~ 27415286 (+) True AMCG00013298

Expression Profile