RNA id: TU53722



Basic Information


Item Value
RNA id TU53722
length 365
lncRNA type inter_gene
GC content 0.62
exon number 1
gene id G43081
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25600813 ~ 25601177 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAGCTAACAGTAGGTCAGAATGGTTCTGCAGAATTGACCACTCACTGCCCCCGGGTCTTCTATCTAGGCCAGCTCACCTTACTCAGGACACCTTGCTGCACACCAGTCTTCCGGGTGGCCTTTTTTAATCTGTCACTGGGTGTGGGGAGGACGTGAAGCCCCATGCTGCGTCTGTAGGGGGTGGCCCCGGGGCCTGCCCCTCCCCATGCCTGCTGTTGCTGCCTGGGGCCCCTGCCTCGCTTCCCACCCACGTGCTCCTGGCTCTCCAGATGCCTCTTTGCTGCACTGAGAGGAGCAGCTCTGCAGGGGGTGCGCTTCCTCACCTTCacttccccttcccctcctgACAGCCGCCCACACCCTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU53721 lncRNA upstream 4872 25594697 ~ 25595941 (+) True G43080
TU53720 lncRNA upstream 6206 25594371 ~ 25594607 (+) True G43079
TU53719 lncRNA upstream 8479 25588479 ~ 25592334 (+) True G43078
TU53705 lncRNA upstream 75821 25522478 ~ 25524992 (+) True G43064
TU53704 lncRNA upstream 87912 25512208 ~ 25512901 (+) True G43063
TU53723 lncRNA downstream 2821 25603998 ~ 25604238 (+) True G43082
TU53725 lncRNA downstream 18433 25619610 ~ 25620005 (+) True G43084
TU53726 lncRNA downstream 19760 25620937 ~ 25621239 (+) True G43085
TU53754 lncRNA downstream 194539 25795716 ~ 25798013 (+) True AMCG00013248
TU53792 lncRNA downstream 206242 25807419 ~ 25844594 (+) True G43138
AMCG00013237 mRNA upstream 46019 25551595 ~ 25554794 (+) True AMCG00013237
AMCG00013236 mRNA upstream 79293 25513353 ~ 25521520 (+) True AMCG00013236
AMCG00013232 mRNA upstream 115193 25479858 ~ 25485620 (+) True AMCG00013232
AMCG00013234 mRNA upstream 176829 25421661 ~ 25423984 (+) True AMCG00013234
AMCG00013229 mRNA upstream 216341 25375516 ~ 25384472 (+) True AMCG00013229
AMCG00013243 mRNA downstream 145488 25746665 ~ 25775438 (+) True AMCG00013243
AMCG00013244 mRNA downstream 176735 25777912 ~ 25784972 (+) True AMCG00013244
AMCG00013248 mRNA downstream 192228 25793405 ~ 25796522 (+) False AMCG00013248
AMCG00013251 mRNA downstream 554578 26155755 ~ 26161064 (+) False AMCG00013251
AMCG00013255 mRNA downstream 653797 26254974 ~ 26258950 (+) True AMCG00013255
TU53706 other upstream 79132 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 830665 24768424 ~ 24770148 (+) True G42858
TU53407 other upstream 851418 24747492 ~ 24749395 (+) True G42846
TU52922 other upstream 3355023 22242429 ~ 22245790 (+) True G42453
TU52773 other upstream 4114005 21485321 ~ 21486808 (+) False G42344
TU53847 other downstream 653802 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 923649 26524826 ~ 26540049 (+) True G43263
TU54005 other downstream 1206987 26808164 ~ 26811615 (+) True G43309
TU54155 other downstream 1557125 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 1784488 27385665 ~ 27415286 (+) True AMCG00013298

Expression Profile