RNA id: TU53725



Basic Information


Item Value
RNA id TU53725
length 396
lncRNA type inter_gene
GC content 0.64
exon number 1
gene id G43084
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25619610 ~ 25620005 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAGGCTCCAGGGATTGTGGGTAGTCCTGCGGTGGCTGCCCTTCCCCTCTCTTATCCTGCGACTCCGCCCCCTTGGAGGCGTGGGGAGGGGCCGGGCTCAGAGCGGGGGAGCGGGGGGCGGCAGCCGGGCTGGGGGCGGGGCATGGGGTGCAGGGAGTGCTCTTGGGGTGCGGCCGTAGGGACGGGGAGCGACAGCAGGGAGACAGCCTGGCGCCACAGGCCCCTGGAGAAGGAACACTTTTGTTGGAAGGGGCAAAGGAGAAAGGCTTGGCAGTCTTAGGGGTCCTGGGCTGGGACAGCAAGTCATCCAGCTCCATGTGGGGGTCCTCTGGCTTCCGCTGTGCCTGCAGATACAAAATAATGGGTATAAAATGTTACTTGGAGAACTGCACTGGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU53723 lncRNA upstream 15372 25603998 ~ 25604238 (+) True G43082
TU53722 lncRNA upstream 18433 25600813 ~ 25601177 (+) True G43081
TU53721 lncRNA upstream 23669 25594697 ~ 25595941 (+) True G43080
TU53720 lncRNA upstream 25003 25594371 ~ 25594607 (+) True G43079
TU53719 lncRNA upstream 27276 25588479 ~ 25592334 (+) True G43078
TU53726 lncRNA downstream 932 25620937 ~ 25621239 (+) True G43085
TU53754 lncRNA downstream 175711 25795716 ~ 25798013 (+) True AMCG00013248
TU53792 lncRNA downstream 187414 25807419 ~ 25844594 (+) True G43138
TU53839 lncRNA downstream 533231 26153236 ~ 26161139 (+) True AMCG00013251
TU53853 lncRNA downstream 638705 26258710 ~ 26258982 (+) False AMCG00013255
AMCG00013237 mRNA upstream 64816 25551595 ~ 25554794 (+) True AMCG00013237
AMCG00013236 mRNA upstream 98090 25513353 ~ 25521520 (+) True AMCG00013236
AMCG00013232 mRNA upstream 133990 25479858 ~ 25485620 (+) True AMCG00013232
AMCG00013234 mRNA upstream 195626 25421661 ~ 25423984 (+) True AMCG00013234
AMCG00013229 mRNA upstream 235138 25375516 ~ 25384472 (+) True AMCG00013229
AMCG00013243 mRNA downstream 126660 25746665 ~ 25775438 (+) True AMCG00013243
AMCG00013244 mRNA downstream 157907 25777912 ~ 25784972 (+) True AMCG00013244
AMCG00013248 mRNA downstream 173400 25793405 ~ 25796522 (+) False AMCG00013248
AMCG00013251 mRNA downstream 535750 26155755 ~ 26161064 (+) False AMCG00013251
AMCG00013255 mRNA downstream 634969 26254974 ~ 26258950 (+) True AMCG00013255
TU53706 other upstream 97929 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 849462 24768424 ~ 24770148 (+) True G42858
TU53407 other upstream 870215 24747492 ~ 24749395 (+) True G42846
TU52922 other upstream 3373820 22242429 ~ 22245790 (+) True G42453
TU52773 other upstream 4132802 21485321 ~ 21486808 (+) False G42344
TU53847 other downstream 634974 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 904821 26524826 ~ 26540049 (+) True G43263
TU54005 other downstream 1188159 26808164 ~ 26811615 (+) True G43309
TU54155 other downstream 1538297 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 1765660 27385665 ~ 27415286 (+) True AMCG00013298

Expression Profile