RNA id: TU53741



Basic Information


Item Value
RNA id TU53741
length 348
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G43100
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25587914 ~ 25588261 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTTATGAACATCAAATTCTATGTAAAAGCATTTTAGTATTAAGATTTGTATAGATGGCTTATGAAcgaatataagaaaaaaaaatatctgtgagTTGCATTCttctcttcatttttatttatggaaTGAGACGACTGGTATACACATACTGTCCGAAAGACTAGCTTCAGAAAACCCACTTCAATTAACCTGTTTTGAAAAAGCAGTTTACACAATCGAGTGGTAGCCATTAAGACATTATAAAGAGTGTTTTAGCCTTATGATATACTTCACATCATATTCACAACTAGGAAGCAGGGATATTGGGGACTTTTGAAAGAATGGTAAGAGAGGAAAATGTACTGTGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU53713 lncRNA downstream 67921 25518811 ~ 25519993 (-) True G43072
TU53680 lncRNA downstream 163840 25366266 ~ 25424074 (-) True G43042
TU53610 lncRNA downstream 211591 25079538 ~ 25376323 (-) False G42993
TU53682 lncRNA downstream 218851 25367598 ~ 25369063 (-) True G43044
TU53674 lncRNA downstream 236176 25289470 ~ 25351738 (-) True G43040
TU53740 lncRNA upstream 226 25588487 ~ 25592462 (-) False AMCG00013241
TU53777 lncRNA upstream 188113 25776374 ~ 25777679 (-) False AMCG00013245
TU53779 lncRNA upstream 188113 25776374 ~ 25777723 (-) True AMCG00013245
TU53786 lncRNA upstream 197882 25786143 ~ 25791759 (-) True AMCG00013246
TU53829 lncRNA upstream 531436 26119697 ~ 26119919 (-) True G43165
AMCG00013239 mRNA downstream 50439 25526642 ~ 25537475 (-) True AMCG00013239
AMCG00013238 mRNA downstream 75043 25508197 ~ 25512871 (-) True AMCG00013238
AMCG00013240 mRNA downstream 83398 25493377 ~ 25504516 (-) True AMCG00013240
AMCG00013233 mRNA downstream 169336 25385739 ~ 25418578 (-) True AMCG00013233
AMCG00013235 mRNA downstream 229413 25357680 ~ 25358501 (-) True AMCG00013235
AMCG00013241 mRNA upstream 4198 25592459 ~ 25628252 (-) True AMCG00013241
AMCG00013242 mRNA upstream 97208 25685469 ~ 25685725 (-) True AMCG00013242
AMCG00013245 mRNA upstream 188139 25776400 ~ 25777647 (-) False AMCG00013245
AMCG00013246 mRNA upstream 200138 25788399 ~ 25790305 (-) False AMCG00013246
AMCG00013247 mRNA upstream 208959 25797220 ~ 25803654 (-) True AMCG00013247
TU53711 other downstream 70951 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 421156 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 509670 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 558910 25025876 ~ 25029004 (-) False AMCG00013216
TU53481 other downstream 685486 24882119 ~ 24902428 (-) True AMCG00013204
TU53964 other upstream 968093 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 1684968 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 1980503 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 2479952 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 2879051 28467312 ~ 28467906 (-) True G43684

Expression Profile