RNA id: TU53792


Basic Information

Item Value
RNA id TU53792
length 2661
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G43138
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 25807419 ~ 25844594 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atacagcgAGAGATAGAGATGGGATGGGGAGATGGAACATCATGTACTAGACATTAAAGAGCTACTGCACAATAACCTAAAGTTGAAcatgtttgtaaaaatgtttcctAACAAATATActcctgcatttttaaattttatttttaatgcataatcTCAAACAAGGGAATTGTCAACATGAGTACGACATGGGATTTCTAATGTATAGGAAGATCACATACTGATCTCTCTTGCCATAAAGCACACCGGCTAGGGATTTGAACCACTCAAAAAGGAGAGTGTGGGGACGACACGGGATCAATCCTTCATGTCATCTGCTGACCGTAGTCCTTCTGGGCACCTTTGACAGCTATCAGCCAGGTAGAAGTGGTAAAGTTTGATCCAAGTCTGCAGAGCACACAGATACGGCCTCCGAATCCAATTTTATTGCGCAGTACGAACACGGGACGTTTCTCAGAGGTTTACACACTTTGCTTTGACGGGGTCGAGCAGTGCGTTTCAGGTCCCCTCCGCAGTCTGACTTTAGAGAAAGAGAGCAGACAATCGGTCCTGTAATGATCATGTGTAATTTCTGGTTAATTTCCGAGACAGTCATTGTCAACTAATAATTTAGTCCAGGGCTCACTTGTACAAAATCGCTTCATGGTGCTGTAATCCTAAAATGATCAGATGATTAGGAAGGTATAACAGGTTTTTACGTCAATTCAATCTAAATCTTAAAAtggatatttatttgaaatcctTTTGGCACTTTTAAgttgaaaaaataagttttgtcCAAGAATATGTCAATCCTTAAATTGTAAAACTTTCCACAGCAATAAAAGGAGTTTAGTGTCGCAGCAAATTATGGCACTATATTGTTACAGGGCTTAACTGAATTTTAAAGTGGTCCAACAATGGTTCTTAACCTAGACAGACCTCTTAAGTGACTGTACATGCCCACATTTTCACTCTCCTCTCTCATATagcaaaataagacattttatcTGCACATGGTACCAGTAACCATTGAGTGgattaattcaattaactttCTGATCTCAGGTCTGCACAAACTGGGATTGGGGATGATTGTAATAGTAAGCCAGCACCCTCTTGCTAAAGTCCAACCAAAACTCTGGACCTTGATGCCATTTTCCCCACACAGCGCTTGTATGAGCGTACAATGTTTGCAGAGAACACGACCCAGATGGTTTTTAAGACTATTTACAGCTTCAGGCAGCCAGTGAAAGGGGAAGGAGTTTTCAGTGCAGCAATTCACATCAAAAGGGGCTTCTACAAGTTGCTGCACGACTATCCAATAAAAGACTGAAATGTTGGCTTGTGTACTAGATCTGGAGCTGTAGTGTGTGCACTTCAATACACtattgttttctcattaaatTTTGTCTTAATTAAGTAGGATAGAGTTATCATTATTTCTAAAGCCAACCCCACTGCCAGTCGATAAGCATACGAGATTCTCAATATGCTTTGTCTTTTAGACTGGACATCCTTATGGTGGACAGTTTTAAGGAGTGcaatttaagatgttttacaaacaaaggcaattaaaacaaaaacaaatgcaagtatggaattttatttttccttaaagaaaaaaacactaatacaGATGTTGGCCATAAAAGCTCACAACAGCAGAGTATACGTAGCTGATGTGCAGATTGGCAAAGTCAAGACTAGCCTGTCTGATATGTAACATCTGGATACAATGGTGTTGTTTCTCTGGGGCTTTACAATACAGGGCACTGTTGGCGGCCTACTGCACCACTTACAGATGTTTCAGCCGGAAGTTTCAAACGAGTGTTTTGTGGTTGATGTTGCAAGCATTTGAactacttaaattaaaaatggccCTCCATCTCTCTGCAAACAAAAAGCTCTGATGAAAACTCATGTTTCTTAATACGAACAAATCGACCAAAAAGCTGTATAGCATTAAATTTAGTCTCCATGCTGACCTGACCAAATTTCTTCAGTAAACCTCCGTCAGAAACACCCCATGCTCCGATTTGTCTTTTTACCTTTCTCCATTAAGTTTGGTTATTTGTATTCAAACGCTTGCAGTAAAAATCGCACCATTTCTCATGCAGTTTTCAGGAAAGGCCACTTCAGATAAATACAGGTTTAATTTTTGTATCCGCCCCcccaatgttttttttttttttttttttaaacactttttaagtttttagtttttgtattttttatatattttttaaggatcTCACTGGTTCCTCCTTTTTGTGTAGTtgtgaaacaagaaaacagtaaatgaaaaaaaaaatcatgcaaaCTCTCTCAAAcggcaaaaataaaataaaaaatgaagagatACTGTCACTTCCAAATGTCTtttcagatacacacacacggcaGCACACGCACacgagaggaaaacaaaaaagaaaaccaccaCTGTTCTGTaatgcttctttaaaaataaatgagttcagaaaataataataataatataataaaaaatagaaaaactaaccaacaaaaaaataagaacaaatgaaaaaagggtgattgttatttttgtatctagAACGCTGGATAAAAAGTCTTGCGTCAAACAAAGGATGAAAAGCCAGCGATGGGAGCTCTAGACCCAGGGGCGAGGCTACTGGGGGGTCTGTAGAGGGTGCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53754 lncRNA upstream 9406 25795716 ~ 25798013 (+) True AMCG00013248
TU53726 lncRNA upstream 186180 25620937 ~ 25621239 (+) True G43085
TU53725 lncRNA upstream 187414 25619610 ~ 25620005 (+) True G43084
TU53723 lncRNA upstream 203181 25603998 ~ 25604238 (+) True G43082
TU53722 lncRNA upstream 206242 25600813 ~ 25601177 (+) True G43081
TU53839 lncRNA downstream 308642 26153236 ~ 26161139 (+) True AMCG00013251
TU53853 lncRNA downstream 414116 26258710 ~ 26258982 (+) False AMCG00013255
TU53875 lncRNA downstream 523201 26367795 ~ 26396705 (+) False AMCG00013257
TU53895 lncRNA downstream 604790 26449384 ~ 26478544 (+) False AMCG00013265
TU53997 lncRNA downstream 940359 26784953 ~ 26785561 (+) True G43303
AMCG00013248 mRNA upstream 10897 25793405 ~ 25796522 (+) False AMCG00013248
AMCG00013244 mRNA upstream 22447 25777912 ~ 25784972 (+) True AMCG00013244
AMCG00013243 mRNA upstream 31981 25746665 ~ 25775438 (+) True AMCG00013243
AMCG00013237 mRNA upstream 252625 25551595 ~ 25554794 (+) True AMCG00013237
AMCG00013236 mRNA upstream 285899 25513353 ~ 25521520 (+) True AMCG00013236
AMCG00013251 mRNA downstream 311161 26155755 ~ 26161064 (+) False AMCG00013251
AMCG00013255 mRNA downstream 410380 26254974 ~ 26258950 (+) True AMCG00013255
AMCG00013252 mRNA downstream 415446 26260040 ~ 26312137 (+) True AMCG00013252
AMCG00013254 mRNA downstream 469692 26314286 ~ 26318743 (+) True AMCG00013254
AMCG00013253 mRNA downstream 477172 26321766 ~ 26363091 (+) True AMCG00013253
TU53706 other upstream 285738 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 1037271 24768424 ~ 24770148 (+) True G42858
TU53407 other upstream 1058024 24747492 ~ 24749395 (+) True G42846
TU52922 other upstream 3561629 22242429 ~ 22245790 (+) True G42453
TU52773 other upstream 4320611 21485321 ~ 21486808 (+) False G42344
TU53847 other downstream 410385 26254979 ~ 26257842 (+) False AMCG00013255
TU53939 other downstream 680232 26524826 ~ 26540049 (+) True G43263
TU54005 other downstream 963570 26808164 ~ 26811615 (+) True G43309
TU54155 other downstream 1313708 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 1541071 27385665 ~ 27415286 (+) True AMCG00013298

Expression Profile