RNA id: TU53829



Basic Information


Item Value
RNA id TU53829
length 223
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G43165
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26119697 ~ 26119919 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tctccatccaaagaatgtggggaagcaataaaaaaggcaaacaggatgctagggtatattgtcaaaagtgtagaattgagaacaagggcagtgatgttcagactgtacaatgcactagttagagctcatctggatactgtgtgcagttctgggctccacacttcaagaaagatatcgctgctctagaggcagttcagaggagagcaaccagacttattccagg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU53786 lncRNA downstream 327938 25786143 ~ 25791759 (-) True AMCG00013246
TU53779 lncRNA downstream 341974 25776374 ~ 25777723 (-) True AMCG00013245
TU53777 lncRNA downstream 342018 25776374 ~ 25777679 (-) False AMCG00013245
TU53740 lncRNA downstream 527235 25588487 ~ 25592462 (-) False AMCG00013241
TU53741 lncRNA downstream 531436 25587914 ~ 25588261 (-) True G43100
TU53835 lncRNA upstream 28497 26148416 ~ 26148633 (-) True G43171
TU53848 lncRNA upstream 135077 26254996 ~ 26257823 (-) True G43184
TU53849 lncRNA upstream 135077 26254996 ~ 26257823 (-) False G43184
TU53851 lncRNA upstream 135077 26254996 ~ 26257823 (-) False G43184
TU53862 lncRNA upstream 189434 26309353 ~ 26312144 (-) True G43194
AMCG00013250 mRNA downstream 209575 25839468 ~ 25910122 (-) True AMCG00013250
AMCG00013249 mRNA downstream 306963 25811718 ~ 25812734 (-) True AMCG00013249
AMCG00013247 mRNA downstream 316043 25797220 ~ 25803654 (-) True AMCG00013247
AMCG00013246 mRNA downstream 329392 25788399 ~ 25790305 (-) False AMCG00013246
AMCG00013245 mRNA downstream 342050 25776400 ~ 25777647 (-) False AMCG00013245
AMCG00013258 mRNA upstream 359879 26479798 ~ 26484414 (-) True AMCG00013258
AMCG00013259 mRNA upstream 365514 26485433 ~ 26492758 (-) True AMCG00013259
AMCG00013263 mRNA upstream 376017 26495936 ~ 26500765 (-) True AMCG00013263
AMCG00013262 mRNA upstream 381277 26501196 ~ 26512078 (-) True AMCG00013262
AMCG00013261 mRNA upstream 430102 26550021 ~ 26551291 (-) True AMCG00013261
TU53711 other downstream 602734 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 952939 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 1041453 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 1090693 25025876 ~ 25029004 (-) False AMCG00013216
TU53481 other downstream 1217269 24882119 ~ 24902428 (-) True AMCG00013204
TU53964 other upstream 436435 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 1153310 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 1448845 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 1948294 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 2347393 28467312 ~ 28467906 (-) True G43684

Expression Profile