RNA id: TU53849


Basic Information

Item Value
RNA id TU53849
length 1111
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G43184
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26254996 ~ 26257823 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTAacttttattacaatatttttattctgtACACAATGATGTTCTCACTTCAGTTCTTTAACAGCCAgaACCAGGTGGCAGGGACTGTTTGAGCTTCTCTGCCTTCTCCTTGTCTGTGATGACGAGGGTGTACAGGTACCGGCTGCAGCGCACCTTGAACTTCACATTGTCCTTGTTCTTCTTGATCTTGACAGCTTTTGGCATCCTTCCTCCTGGCTGTGAGCAGGAAATCTTTGATCTCTTCGATTTTTCGTGGCTTAAaaggagaaacagaaacagtgttACATTCAGAAACGCATCTTTCACAAGAGTTACAAAACATGCCAAACGCTTAAAGCACACAATGGGAAAAAGTAACCTTATCATTAAATAAGAGCACACTTCCAGGATATTAACACCTGTGCACCTGGCTACAAAGAGGACCCGGGATTGCTGATGGAAAGACATGGCTGAAATAAACCAACGAGCCCGTGTGTTACAAACAAACACGTTATTCTTCAAAGCAGAAACAGAGTGCGTGTCCGGAGCCTGTAGCGCAGCCTGAACGACAAGGCCGGCAGATGTAAAAAATGTCCGACCAGCTACACCGATACACACGGATATATAAAGACCCGAGGACCGACAGACAACTACACGAACAGACGGGAGAGAGCCGAGTTTTGGGAGCAGCCATGTCCCGGAGACAGTGACACTCAGACAGGCTGCTGCCCCAGCGCTAGGCCATCACAACACAAGACACTCATTCAATCAAATAAGACTGAATCGCTACACATCAAACCCAGAACCAGACCCCAATTTAACGGGATAAACACCTATCGATGCGCAGTGTGACTGTAAAGGGCTCTTACCATGGTGTGGTGTTTGTAGACTGCAACCTGAAAGAGacgggagacagagagggggtcAGTGCGCCTGCATGTTAAAACCGCACAGAATCGTCAAAACATGGTGGAATCGGGCGGGCAGGGGGAAGGCAAGGGTTTGGGGTGCATGATAACGCGATGTGGGTTGAATAAGACACGATATATGCTTGGATGGGGTTAGATTATAATTCATGTTAGAAGCGCTGAAGAAATGTCCTACTCACACAGTCCGCCAGCGAGAGGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53835 lncRNA downstream 106363 26148416 ~ 26148633 (-) True G43171
TU53829 lncRNA downstream 135077 26119697 ~ 26119919 (-) True G43165
TU53786 lncRNA downstream 463237 25786143 ~ 25791759 (-) True AMCG00013246
TU53779 lncRNA downstream 477273 25776374 ~ 25777723 (-) True AMCG00013245
TU53777 lncRNA downstream 477317 25776374 ~ 25777679 (-) False AMCG00013245
TU53862 lncRNA upstream 51530 26309353 ~ 26312144 (-) True G43194
TU53873 lncRNA upstream 109156 26366979 ~ 26367220 (-) True G43204
TU53911 lncRNA upstream 221788 26479611 ~ 26479850 (-) False AMCG00013258
TU54119 lncRNA upstream 736549 26994372 ~ 26995304 (-) True G43400
TU54130 lncRNA upstream 788538 27046361 ~ 27046563 (-) True G43410
AMCG00013250 mRNA downstream 344874 25839468 ~ 25910122 (-) True AMCG00013250
AMCG00013249 mRNA downstream 442262 25811718 ~ 25812734 (-) True AMCG00013249
AMCG00013247 mRNA downstream 451342 25797220 ~ 25803654 (-) True AMCG00013247
AMCG00013246 mRNA downstream 464691 25788399 ~ 25790305 (-) False AMCG00013246
AMCG00013245 mRNA downstream 477349 25776400 ~ 25777647 (-) False AMCG00013245
AMCG00013258 mRNA upstream 221975 26479798 ~ 26484414 (-) True AMCG00013258
AMCG00013259 mRNA upstream 227610 26485433 ~ 26492758 (-) True AMCG00013259
AMCG00013263 mRNA upstream 238113 26495936 ~ 26500765 (-) True AMCG00013263
AMCG00013262 mRNA upstream 243373 26501196 ~ 26512078 (-) True AMCG00013262
AMCG00013261 mRNA upstream 292198 26550021 ~ 26551291 (-) True AMCG00013261
TU53711 other downstream 738033 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 1088238 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 1176752 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 1225992 25025876 ~ 25029004 (-) False AMCG00013216
TU53481 other downstream 1352568 24882119 ~ 24902428 (-) True AMCG00013204
TU53964 other upstream 298531 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 1015406 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 1310941 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 1810390 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 2209489 28467312 ~ 28467906 (-) True G43684

Expression Profile