RNA id: TU53862



Basic Information


Item Value
RNA id TU53862
length 2752
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G43194
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26309353 ~ 26312144 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AACctagaattatatttttttattatcattattcccCTCCTGAGGGggtataatacataaaaaccaAGCACCAGTCCCAATAGCTGAAGATGGTGCAACAATGGAACAACCTTACATGcatcaaaaaacaaaccgacaaatggaaaaaacaaacaaacccaaaaaaattataataacaaaaaaaaatctacagctCTAAGGATCAAAAATATCTACTGAATTGAACATTATCAGACATGGAAAAAGCAAACAGGTTTTCGACCTGAGGGGGACAGTTTTCTCTCATGGAAGACGTATTAGCAGTGTTAGTATCCTATTCATTTTTTCTGACCCAATGTACTGCATTTTTCATACTGCCTTTTCAGTAATAGTGCATTATTGTTAtgttgtaacattttaaaaacaattcctgCAGTGGAAGGGGTTTGATATTGGTACAGTAATAAAAGCCCATAAAACTGGTTCATGCTTCACTTTACACTTCTGAATATATGAAACAGTAGGAGCCCACAATGCTGGAATGACTTTGTGcattcataaaaagaaaaaaggaatgaaatTAAAATCGTCCTTTGCGGTGGAGAAAACATCAGCCTGTCCCAGGATCGAATAACCAAAAAACAAGAGTCATTGACATCCAGGCTCCAGCCTTCACTCATTTAGTATGTAGAAGTCTAACCACTTGTGGCACATGAACATACAAATCGCtgttattataatacaatttatatacaaaaaaaaaaaaagttggtctGACACACACTTGAACACTTCAGCTTcaaatcaatgtaaaaaaaactgcacttcGGAGAATTACAATTCTATCATCCACAAACGGGGAAAACAACTATGCAAGAtggatgttgtttttaatttttttaattgaaaaactaaTTGTAACAAACTCAAGGCCAGGGGTCAGGCAGGAAGAGTTTGGGTTCGTGGTTCAAGCTTGAGGAGCCCATTCCTCTAGTTTTAATGTTATAAAGATTGAAGaatatatagatctatatatttttaaaaaagcatttatttcctttGCTGTGCTTCTGCAGTAACCCTTCCAAATTAAGTGCCTTTAGCACAGACCAGAAAAGTAGGTTAGTGCATCTGAGAGGGGGTGAAATTGAGGATATGGATGTTGGTAGTTGGGGCACAAGCAAAAACTGAATCTGGAAGACATGACAAGGAGAGGGTGGTTCTCCATCCCAGTCATGAAATAACTGGTTGGCTCAGCATTTGAATTGTGCTTCAAAAGTATCAAAAGTCTGATAGAGAAAGTGTACTGAAGTATGGTGGTGTTGGGGTTTCAGTTCTTGTGGGGGCCAGTTTGTAGGAAAGAACGGTTGAAGCCCCAGTTGGTACTGTATGTGACTCATGTTTCAGTGTACAGCAGATGGgcagagaaaatacaaacagcAATACAAGATAAGGCATAAGGTTTTCCAGTTGGGAAAAACTGTTAAAGCTTGGACACTCAATTTcaagagtgttttgttttttttctttaacttttccCTTACCTGATCTTGTATTCAAAGTAAAGTTAACAAAATAGAGTGGAACTAAAATAAACTGGTGAGAAATGTGTATCCCTTATGCTGCATGCTTTGGAAACTTTGCCACCAAGTCGTTTCCTTCCCTGTTGGAAATTCCTTGGCcaagaattaaaatgaataaaacaaacaaacaaacaaacaaaacaaacattaaatcgTGATGAAGAGACAAAtgttataaaattattataaaacagtCTCGTAGCTAGTCAgttaaatggaaagaaaaaaaggggaGGGGGTTAAGAGACAGTAAAAGCACGCTCCCATTCctcacatatttaaatgttgaacTTTAAGATGCCTCACTTTAAATACACTCCTATAGATCAGAATCTATTCCTTGGTTAGGAGATGCATCAATGTGTTTTTGCAATCACTCTCACGCTCCCAAAAGGTTTGATGACCGAAGCACAGTTGcctgaactgaaaaaaaagtgtgttcaTCTTAGCATCTTGTCTTAGtatgaaagagaaagaggctGGCAAATTTGAAAACTAAGAAACACAATCCAGAAAGTGGACTGGCGATGGAAGAGGTTTGTAGCTTCCTTATGGAAAAGCTATGGCATAAAACCACTTAAATACcatagtaaaaaaaacaattttatttcagCTTGACGTCACCCTGTCTGAGCTCTACCTCCTgtctaaaagaaaaacaggcaaGGTACCGAGCTGGAGCAAAGCATGCTTTGAGGTAAATCAGTTGGTTTCCAATGTGAACCTAAAAATGTCTCATTCTTGATTAACCACCTCATATTTTCATGAACTCACATGCCTCTATCACACAGCTAATCAACCTTGTAACTGGagaggggagaagaaaaaaaagggaaccATTCCAGTTTGAGTGACTGAAAAATTAGGAGAACTGCATTTGTTTCTGGAGTTTGAGAACAGCTGTTGGGGATATCGAGGTGCTGGCCACGGTGAAGGCAACTGGGCTGGTGTCTGGgagctttttcttttaaatatgcaattaaaacattgtgactCCCTCCCCAGGTAAGCCATTTCCAGCAGGCCGGGCGAGAGCGGTCACTCAGTGCAGGGTCCATTTCAGCAGGGCCACACATTGGGAGGCTGTGCTTTCCTCAGAAACGGGGGGTGTGGGTTGGGAGGTAGGCGGTGGGTGGGTGTAGAGGGGGTCTAAACTTGGAAATCATTCCCAAAATGCCTCCTCTGGTCAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU53848 lncRNA downstream 51530 26254996 ~ 26257823 (-) True G43184
TU53849 lncRNA downstream 51530 26254996 ~ 26257823 (-) False G43184
TU53851 lncRNA downstream 51530 26254996 ~ 26257823 (-) False G43184
TU53835 lncRNA downstream 160720 26148416 ~ 26148633 (-) True G43171
TU53829 lncRNA downstream 189434 26119697 ~ 26119919 (-) True G43165
TU53873 lncRNA upstream 54835 26366979 ~ 26367220 (-) True G43204
TU53911 lncRNA upstream 167467 26479611 ~ 26479850 (-) False AMCG00013258
TU54119 lncRNA upstream 682228 26994372 ~ 26995304 (-) True G43400
TU54130 lncRNA upstream 734217 27046361 ~ 27046563 (-) True G43410
TU54132 lncRNA upstream 737424 27049568 ~ 27049842 (-) True G43412
AMCG00013250 mRNA downstream 399231 25839468 ~ 25910122 (-) True AMCG00013250
AMCG00013249 mRNA downstream 496619 25811718 ~ 25812734 (-) True AMCG00013249
AMCG00013247 mRNA downstream 505699 25797220 ~ 25803654 (-) True AMCG00013247
AMCG00013246 mRNA downstream 519048 25788399 ~ 25790305 (-) False AMCG00013246
AMCG00013245 mRNA downstream 531706 25776400 ~ 25777647 (-) False AMCG00013245
AMCG00013258 mRNA upstream 167654 26479798 ~ 26484414 (-) True AMCG00013258
AMCG00013259 mRNA upstream 173289 26485433 ~ 26492758 (-) True AMCG00013259
AMCG00013263 mRNA upstream 183792 26495936 ~ 26500765 (-) True AMCG00013263
AMCG00013262 mRNA upstream 189052 26501196 ~ 26512078 (-) True AMCG00013262
AMCG00013261 mRNA upstream 237877 26550021 ~ 26551291 (-) True AMCG00013261
TU53711 other downstream 792390 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 1142595 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 1231109 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 1280349 25025876 ~ 25029004 (-) False AMCG00013216
TU53481 other downstream 1406925 24882119 ~ 24902428 (-) True AMCG00013204
TU53964 other upstream 244210 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 961085 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 1256620 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 1756069 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 2155168 28467312 ~ 28467906 (-) True G43684

Expression Profile