RNA id: TU53873


Basic Information

Item Value
RNA id TU53873
length 242
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G43204
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26366979 ~ 26367220 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attgtgatggctagacgactgggtcagagcatctccaaaactgcagctcttgtggggtgttcccggtctgcagtggtcagtacctatcaaaagtggtccaaggaaggaaaagcggtgaaccggtgacagggtcatgggtggccaaggctcattgatgcacgtggggagcgaaggctggcccgtgtggtccaatccaacagatgagctactgtagctcaaattgctgaaaaagtgaatgctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53862 lncRNA downstream 54835 26309353 ~ 26312144 (-) True G43194
TU53848 lncRNA downstream 109156 26254996 ~ 26257823 (-) True G43184
TU53849 lncRNA downstream 109156 26254996 ~ 26257823 (-) False G43184
TU53851 lncRNA downstream 109156 26254996 ~ 26257823 (-) False G43184
TU53835 lncRNA downstream 218346 26148416 ~ 26148633 (-) True G43171
TU53911 lncRNA upstream 112391 26479611 ~ 26479850 (-) False AMCG00013258
TU54119 lncRNA upstream 627152 26994372 ~ 26995304 (-) True G43400
TU54130 lncRNA upstream 679141 27046361 ~ 27046563 (-) True G43410
TU54132 lncRNA upstream 682348 27049568 ~ 27049842 (-) True G43412
TU54137 lncRNA upstream 688332 27055552 ~ 27059242 (-) True G43417
AMCG00013250 mRNA downstream 456857 25839468 ~ 25910122 (-) True AMCG00013250
AMCG00013249 mRNA downstream 554245 25811718 ~ 25812734 (-) True AMCG00013249
AMCG00013247 mRNA downstream 563325 25797220 ~ 25803654 (-) True AMCG00013247
AMCG00013246 mRNA downstream 576674 25788399 ~ 25790305 (-) False AMCG00013246
AMCG00013245 mRNA downstream 589332 25776400 ~ 25777647 (-) False AMCG00013245
AMCG00013258 mRNA upstream 112578 26479798 ~ 26484414 (-) True AMCG00013258
AMCG00013259 mRNA upstream 118213 26485433 ~ 26492758 (-) True AMCG00013259
AMCG00013263 mRNA upstream 128716 26495936 ~ 26500765 (-) True AMCG00013263
AMCG00013262 mRNA upstream 133976 26501196 ~ 26512078 (-) True AMCG00013262
AMCG00013261 mRNA upstream 182801 26550021 ~ 26551291 (-) True AMCG00013261
TU53711 other downstream 850016 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 1200221 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 1288735 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 1337975 25025876 ~ 25029004 (-) False AMCG00013216
TU53481 other downstream 1464551 24882119 ~ 24902428 (-) True AMCG00013204
TU53964 other upstream 189134 26556354 ~ 26557324 (-) True AMCG00013264
TU54172 other upstream 906009 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 1201544 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 1700993 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 2100092 28467312 ~ 28467906 (-) True G43684

Expression Profile