RNA id: TU53939



Basic Information


Item Value
RNA id TU53939
length 635
RNA type TUCP
GC content 0.54
exon number 4
gene id G43263
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26524826 ~ 26540049 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AAGCGTTTTTGCTCGAGTTCCTGGAAGTGTGGTGGGACAGGGCAGAGCAAAGAAATGTTTGAGGAGCCAAAGGGCATGGAGGAAGAGGACAGTCCAAGCCTGGGGCTTGTCTTGGGGAATGCCCAGTCAGAAGAGGTGGGGGATGAGATGGACCCAGTGGTGGTGTGGGCCCCAAGTGGACGGAGGCTGGTTTCGGGGCTGTTAGCTCTAAACTTAGTGCTTTTGGGGGCAGCCTTGGTGACAGGAGAGGCATTTAACCCCAATGCCCTAAAGCACCAGGAGCCCCAGGTGTTCATTCTGCTGCTGATGGGACTCAGTCTTATATGGATTTTGTGGTACCTCCTTTGGGCTCGGAGACAGCCGGGCATTTCTCCACACACAGATCACCACGCTGGCAGCGTCTGCATGACAGTGGTCCTCCTGGTGTTCACAGCCTGCAGTCTTCTGCTCCAGGTGTTCAAGATGGGCTATTACGTTATTCTGATGGAATGTAAACCAACTGCTAAAGTACTCTTGCCCTTCATTGAATCCCCCTTTCTCGGACTGCAGACGTACCTGTTATGGGCTCACTCCAAAGACTGCATCCACCGACACAAGATCCTCACCAGGGCTGGCCTGGTGCTGGTTCTCACTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU53895 lncRNA upstream 46282 26449384 ~ 26478544 (+) False AMCG00013265
TU53875 lncRNA upstream 128121 26367795 ~ 26396705 (+) False AMCG00013257
TU53853 lncRNA upstream 265844 26258710 ~ 26258982 (+) False AMCG00013255
TU53839 lncRNA upstream 363687 26153236 ~ 26161139 (+) True AMCG00013251
TU53792 lncRNA upstream 680232 25807419 ~ 25844594 (+) True G43138
TU53997 lncRNA downstream 244904 26784953 ~ 26785561 (+) True G43303
TU54027 lncRNA downstream 332772 26872821 ~ 26930253 (+) True G43326
TU54034 lncRNA downstream 352565 26892614 ~ 26923139 (+) False AMCG00013281
TU54035 lncRNA downstream 357460 26897509 ~ 26904963 (+) True AMCG00013286
TU54122 lncRNA downstream 470323 27010372 ~ 27010651 (+) True G43402
AMCG00013266 mRNA upstream 520 26516304 ~ 26524306 (+) True AMCG00013266
AMCG00013265 mRNA upstream 47785 26427946 ~ 26477041 (+) True AMCG00013265
AMCG00013256 mRNA upstream 120258 26398678 ~ 26404568 (+) True AMCG00013256
AMCG00013257 mRNA upstream 128121 26371523 ~ 26396705 (+) True AMCG00013257
AMCG00013253 mRNA upstream 161735 26321766 ~ 26363091 (+) True AMCG00013253
AMCG00013270 mRNA downstream 17719 26557768 ~ 26564168 (+) True AMCG00013270
AMCG00013267 mRNA downstream 48706 26588755 ~ 26608863 (+) True AMCG00013267
AMCG00013274 mRNA downstream 185185 26725234 ~ 26726439 (+) True AMCG00013274
AMCG00013273 mRNA downstream 197505 26737554 ~ 26738834 (+) True AMCG00013273
AMCG00013275 mRNA downstream 314375 26854424 ~ 26856636 (+) True AMCG00013275
TU53847 other upstream 266984 26254979 ~ 26257842 (+) False AMCG00013255
TU53706 other upstream 1003145 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 1754678 24768424 ~ 24770148 (+) True G42858
TU53407 other upstream 1775431 24747492 ~ 24749395 (+) True G42846
TU52922 other upstream 4279036 22242429 ~ 22245790 (+) True G42453
TU54005 other downstream 268115 26808164 ~ 26811615 (+) True G43309
TU54155 other downstream 618253 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 845616 27385665 ~ 27415286 (+) True AMCG00013298
TU54201 other downstream 1049090 27589139 ~ 27590818 (+) True G43476
TU54319 other downstream 1394025 27934074 ~ 27935938 (+) False AMCG00013310

Expression Profile