RNA id: TU53997



Basic Information


Item Value
RNA id TU53997
length 609
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G43303
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26784953 ~ 26785561 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCAGAATATACAGGGACAGGTGGATATCACCATCATTTCTGTGTTGgagtacataagaacataagaaagtttacaaacgagagggggcctttgacccatcgtgctcgtttggtgttcattaatatctaagtgatccaaggatcctatccagtctatttttaaatgttcccaaactttcagcttcaaccacatcgctgggtagtttattccagattgtgacgactctctgtgtaaagaagtgtctcctgttttccgttttgaatgccttgaagcccaatttccatttgtgtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttggatcaagttcccacatagtctcctctgttccagggtgaaaaggttcagttccctcagtctctctgagtaggactttcccttcagacctggaataagtctgattgctctcctctgaattgcctctaaagcagcgatatccttcttgaagtgtggttcccagaactgtacacagtatccagatgaggagTAAGCAGGAATAAACCCTTCAGTATTCATGAggcattttaaaagctgtt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU53895 lncRNA upstream 306409 26449384 ~ 26478544 (+) False AMCG00013265
TU53875 lncRNA upstream 388248 26367795 ~ 26396705 (+) False AMCG00013257
TU53853 lncRNA upstream 525971 26258710 ~ 26258982 (+) False AMCG00013255
TU53839 lncRNA upstream 623814 26153236 ~ 26161139 (+) True AMCG00013251
TU53792 lncRNA upstream 940359 25807419 ~ 25844594 (+) True G43138
TU54027 lncRNA downstream 87260 26872821 ~ 26930253 (+) True G43326
TU54034 lncRNA downstream 107053 26892614 ~ 26923139 (+) False AMCG00013281
TU54035 lncRNA downstream 111948 26897509 ~ 26904963 (+) True AMCG00013286
TU54122 lncRNA downstream 224811 27010372 ~ 27010651 (+) True G43402
TU54159 lncRNA downstream 484467 27270028 ~ 27417787 (+) True G43438
AMCG00013273 mRNA upstream 46119 26737554 ~ 26738834 (+) True AMCG00013273
AMCG00013274 mRNA upstream 58514 26725234 ~ 26726439 (+) True AMCG00013274
AMCG00013267 mRNA upstream 176090 26588755 ~ 26608863 (+) True AMCG00013267
AMCG00013270 mRNA upstream 220785 26557768 ~ 26564168 (+) True AMCG00013270
AMCG00013269 mRNA upstream 245099 26538899 ~ 26539854 (+) True AMCG00013269
AMCG00013275 mRNA downstream 68863 26854424 ~ 26856636 (+) True AMCG00013275
AMCG00013290 mRNA downstream 77197 26862758 ~ 26870903 (+) True AMCG00013290
AMCG00013281 mRNA downstream 107035 26892596 ~ 26895363 (+) True AMCG00013281
AMCG00013286 mRNA downstream 115009 26900570 ~ 26901377 (+) False AMCG00013286
AMCG00013285 mRNA downstream 123230 26908791 ~ 26920057 (+) True AMCG00013285
TU53939 other upstream 244904 26524826 ~ 26540049 (+) True G43263
TU53847 other upstream 527111 26254979 ~ 26257842 (+) False AMCG00013255
TU53706 other upstream 1263272 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 2014805 24768424 ~ 24770148 (+) True G42858
TU53407 other upstream 2035558 24747492 ~ 24749395 (+) True G42846
TU54005 other downstream 22603 26808164 ~ 26811615 (+) True G43309
TU54155 other downstream 372741 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 600104 27385665 ~ 27415286 (+) True AMCG00013298
TU54201 other downstream 803578 27589139 ~ 27590818 (+) True G43476
TU54319 other downstream 1148513 27934074 ~ 27935938 (+) False AMCG00013310

Expression Profile