RNA id: TU54027



Basic Information


Item Value
RNA id TU54027
length 739
lncRNA type read_through
GC content 0.31
exon number 2
gene id G43326
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26872821 ~ 26930253 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cagtattagtatggtgttcctaataatcctttaggtgagtgtatatgtataatcaAATTTCCTatgaatgtttttctaaaaaggCGGCTAAGCAACTAGTGTCTTGTCATTCTGCGTcagtgtgtggggaaaaaaaacgcTAATTCATCTGCTAGATGTTTCCATTGTCTCTTTAAAAGCATTCTACAGCATTAATGGACTTAATAAGCAAGTCAGGATCATAAAAGACTCCAatctattttgtaaattatgtttgttaattgtttttttttaatgtattattttcatttaaagtaaaatgcatttgagaggtattaaaatgttaaatactgGCAATTTAGGGCCGAACCTTTTGTAATAATACTAGATGGATGTAGGATGGGACACAGGACCACACTTTTACAGCTAGCTTTATTTACTTGACATTTAGTTTCATTTCCAATTTCCTTGTTATGATCGCCTTTGCATTTACCTTTATGACTGACTGGTCTGTTTGTACGTAAGTACTAAATGGGACATAGTGATAACACACTAAGCCACACTGAATAGGAAAAATAGGGACCCCTTTGTATTCACCTGCAAGtgatatttaacacattttgggCCTGGAATAAGACAATAATTACCTATGAAGAATTTAACATTAAACTACAGTCTTTTCAAAGGAAAgtgtattgtgtttatatatataatgtgagaaattaaaaataaaacaattaatgatGAAAgttaaaaaaaa

Function


GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU53997 lncRNA upstream 87260 26784953 ~ 26785561 (+) True G43303
TU53895 lncRNA upstream 394277 26449384 ~ 26478544 (+) False AMCG00013265
TU53875 lncRNA upstream 476116 26367795 ~ 26396705 (+) False AMCG00013257
TU53853 lncRNA upstream 613839 26258710 ~ 26258982 (+) False AMCG00013255
TU53839 lncRNA upstream 711682 26153236 ~ 26161139 (+) True AMCG00013251
TU54122 lncRNA downstream 80119 27010372 ~ 27010651 (+) True G43402
TU54159 lncRNA downstream 339775 27270028 ~ 27417787 (+) True G43438
TU54325 lncRNA downstream 1138393 28068646 ~ 28072799 (+) True AMCG00013317
TU54444 lncRNA downstream 1459436 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 1750557 28680810 ~ 28682174 (+) True AMCG00013336
AMCG00013290 mRNA upstream 1918 26862758 ~ 26870903 (+) True AMCG00013290
AMCG00013275 mRNA upstream 16185 26854424 ~ 26856636 (+) True AMCG00013275
AMCG00013273 mRNA upstream 133987 26737554 ~ 26738834 (+) True AMCG00013273
AMCG00013274 mRNA upstream 146382 26725234 ~ 26726439 (+) True AMCG00013274
AMCG00013267 mRNA upstream 263958 26588755 ~ 26608863 (+) True AMCG00013267
AMCG00013289 mRNA downstream 33435 26963688 ~ 26981369 (+) True AMCG00013289
AMCG00013291 mRNA downstream 51422 26981675 ~ 26998680 (+) True AMCG00013291
AMCG00013283 mRNA downstream 106362 27036615 ~ 27058921 (+) True AMCG00013283
AMCG00013287 mRNA downstream 181597 27111850 ~ 27117437 (+) True AMCG00013287
AMCG00013288 mRNA downstream 199911 27130164 ~ 27140599 (+) True AMCG00013288
TU54005 other upstream 61206 26808164 ~ 26811615 (+) True G43309
TU53939 other upstream 332772 26524826 ~ 26540049 (+) True G43263
TU53847 other upstream 614979 26254979 ~ 26257842 (+) False AMCG00013255
TU53706 other upstream 1351140 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 2102673 24768424 ~ 24770148 (+) True G42858
TU54155 other downstream 228049 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 455412 27385665 ~ 27415286 (+) True AMCG00013298
TU54201 other downstream 658886 27589139 ~ 27590818 (+) True G43476
TU54319 other downstream 1003821 27934074 ~ 27935938 (+) False AMCG00013310
TU54454 other downstream 1554020 28484273 ~ 28488783 (+) True G43682

Expression Profile