RNA id: TU54119


Basic Information

Item Value
RNA id TU54119
length 768
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G43400
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26994372 ~ 26995304 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgagaaattgaacaggtgttcctaataatcctttaggtgagtgtataggagaatgaaacaaaacatttttgaaaagcatGTCTTGCTGATTTGAATTCATGGTTTTTACCTGTTTGTGATGTAGCGGATGAAGTCTGGgtgatacattttgaatttcttTGCTGTGACATGCTCCCCAAAGTATGTTGGTGGGCTGAGGTGAGAGGGTatgaataacataaaatattgtttgaTAGCAGCAGCAATTTGTTGGTCAACATCTACTCCTCTTATaatttttaatcacattataAATGGTGGCCCCTGCTGCTGCAGATGACATACAATGTATTTTGCCCCCATTAGCAAACCGGATTCAGTGAAACAGAAGAGATATGGATGAAATTTGACAATGCTGAACAAACCAATTTCTAGATTAATGGAAGTTTAGTCTGCGGGATGTTCTTCTAGTCTGTTACCAGGAACAAAACTGACACCAGTTCTCCCTTTTAAAGTTATAAAAAAATCTTACTTCTTAGAACGTTCTGGTCCCTTCTCTATGGGCGTGTGGGTGACTGCAGCCCTCAGCAGGATGTAGTCACGGTCATGGTCTGGCAGGAAGATGTACCTAGTCTCCTAATAAGAGCTCAGCTAGGGGCAGCCCCTTGAACCCTTCACTAGCATAGCTACGCAAAGAGTTCTGCATGGTGTTGGTGGAAAACGTATAGAAGGACGTCCGGTTTCCTACATCCTCCTCAAACCCTTTGATCACAGCCCCGTTTGTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53911 lncRNA downstream 514522 26479611 ~ 26479850 (-) False AMCG00013258
TU53873 lncRNA downstream 627152 26366979 ~ 26367220 (-) True G43204
TU53862 lncRNA downstream 682228 26309353 ~ 26312144 (-) True G43194
TU53848 lncRNA downstream 736549 26254996 ~ 26257823 (-) True G43184
TU54130 lncRNA upstream 51057 27046361 ~ 27046563 (-) True G43410
TU54132 lncRNA upstream 54264 27049568 ~ 27049842 (-) True G43412
TU54137 lncRNA upstream 60248 27055552 ~ 27059242 (-) True G43417
TU54146 lncRNA upstream 131476 27126780 ~ 27126988 (-) True G43425
TU54156 lncRNA upstream 162997 27158301 ~ 27158729 (-) True G43435
AMCG00013278 mRNA downstream 87406 26903814 ~ 26906966 (-) True AMCG00013278
AMCG00013279 mRNA downstream 101954 26888488 ~ 26892418 (-) True AMCG00013279
AMCG00013276 mRNA downstream 161683 26830584 ~ 26832689 (-) True AMCG00013276
AMCG00013277 mRNA downstream 173395 26813858 ~ 26820977 (-) True AMCG00013277
AMCG00013271 mRNA downstream 344858 26647688 ~ 26649514 (-) True AMCG00013271
AMCG00013280 mRNA upstream 4270 26999574 ~ 27001457 (-) True AMCG00013280
AMCG00013292 mRNA upstream 150343 27145647 ~ 27159340 (-) True AMCG00013292
AMCG00013295 mRNA upstream 296923 27292227 ~ 27292787 (-) False AMCG00013295
AMCG00013294 mRNA upstream 304523 27299827 ~ 27307855 (-) True AMCG00013294
AMCG00013293 mRNA upstream 340986 27336290 ~ 27339310 (-) True AMCG00013293
TU53964 other downstream 437048 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 1477409 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 1827614 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 1916128 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 1965368 25025876 ~ 25029004 (-) False AMCG00013216
TU54172 other upstream 277925 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 573460 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 1072909 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 1472008 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 2258092 29253396 ~ 29254316 (-) True G43869

Expression Profile