RNA id: TU54122


Basic Information

Item Value
RNA id TU54122
length 280
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G43402
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27010372 ~ 27010651 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acactatgggaggaatagaactagatgaagtaacgcatgagaaagacctaggagtctatgtggactcctcactttctccatccaaacaatgtggggaagcaataaaaaaggcaaacacaatgttagggtatattgtcaaaagtgtagaattgagaacaagggcagtgatgttcagactgtacaatgcactagttagagctcatctggatactgtgtgcagttctgggctccacacttcaagaaagatatcgctgctctagaggcagttcagaggagagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54027 lncRNA upstream 80119 26872821 ~ 26930253 (+) True G43326
TU54034 lncRNA upstream 87233 26892614 ~ 26923139 (+) False AMCG00013281
TU54035 lncRNA upstream 105409 26897509 ~ 26904963 (+) True AMCG00013286
TU53997 lncRNA upstream 224811 26784953 ~ 26785561 (+) True G43303
TU53895 lncRNA upstream 531828 26449384 ~ 26478544 (+) False AMCG00013265
TU54159 lncRNA downstream 259377 27270028 ~ 27417787 (+) True G43438
TU54325 lncRNA downstream 1057995 28068646 ~ 28072799 (+) True AMCG00013317
TU54444 lncRNA downstream 1379038 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 1670159 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA downstream 1670159 28680810 ~ 28682174 (+) False AMCG00013336
AMCG00013291 mRNA upstream 11692 26981675 ~ 26998680 (+) True AMCG00013291
AMCG00013289 mRNA upstream 29003 26963688 ~ 26981369 (+) True AMCG00013289
AMCG00013284 mRNA upstream 47184 26929259 ~ 26963188 (+) True AMCG00013284
AMCG00013282 mRNA upstream 81792 26924566 ~ 26928580 (+) True AMCG00013282
AMCG00013285 mRNA upstream 90315 26908791 ~ 26920057 (+) True AMCG00013285
AMCG00013283 mRNA downstream 25964 27036615 ~ 27058921 (+) True AMCG00013283
AMCG00013287 mRNA downstream 101199 27111850 ~ 27117437 (+) True AMCG00013287
AMCG00013288 mRNA downstream 119513 27130164 ~ 27140599 (+) True AMCG00013288
AMCG00013298 mRNA downstream 375440 27386091 ~ 27386627 (+) False AMCG00013298
AMCG00013296 mRNA downstream 538154 27548805 ~ 27569295 (+) True AMCG00013296
TU54005 other upstream 198757 26808164 ~ 26811615 (+) True G43309
TU53939 other upstream 470323 26524826 ~ 26540049 (+) True G43263
TU53847 other upstream 752530 26254979 ~ 26257842 (+) False AMCG00013255
TU53706 other upstream 1488691 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 2240224 24768424 ~ 24770148 (+) True G42858
TU54155 other downstream 147651 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 375014 27385665 ~ 27415286 (+) True AMCG00013298
TU54201 other downstream 578488 27589139 ~ 27590818 (+) True G43476
TU54319 other downstream 923423 27934074 ~ 27935938 (+) False AMCG00013310
TU54454 other downstream 1473622 28484273 ~ 28488783 (+) True G43682

Expression Profile