RNA id: TU54137


Basic Information

Item Value
RNA id TU54137
length 3691
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G43417
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27055552 ~ 27059242 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGAAATGAACAAACAGTATTGAAAAGCAACAAAGGCTGATTTTTTTCATGGACCTGATCTATAAGTTAAGTTGCCAGAATGGAGGTGGGCACGTCCTTTAGAAGAAGCAGGGATGAAATGTCAAGATATATGATGAGGGTCTCACCACCCGTACCAGACATAAACAGTTTCTGTGCCCGTTAGTGGGTGATGAAATATGATCAGCTCAGCCAGCGAGAGGACAGACACCTTGTTGTTTAAGTATCATTGTGCGTTCCAGGGGATTAGTCAATTTCGTCCTCACAGGAATTTATTAAtgtactgatttatttactttccaggtgggggggggcagtgtttTAAATAGTCTTTCATTTCAAGGCATTTCAAAGTGCTggacaatatattaaaaacaggaaaggaGTGATACAGCTAACCAGGAGAAATAGCACATGAGAAAAGATATGCATGTCTCTGGTGCATTAGGGTCAAGTAAATGTGGGTGCAAGAGAAGAGAACAAGAGAAGGCCTGGGTACAGAGTCTGAGAATACACAGATTTTGGCGCACACAGAGGACCCCTGTCCAAGGGGCGTGGGTTACAGGCAGGTTTGTTGTGATTTAATTTGTGGTTTTATATGAAGAATGAATGTCcgtttttcagtttaaataaattaaatctacaaAGAAGGCTATGACCAAAGCTCTTTGTAACAGACATCCATCCTTGGTATGatgatgcaaaacaaaacaagcaggTTGTGATTAAAGCTAGCGTAAATCAGCCACCCTTCCTCCCTTGCCCTGTGTAATATGCAGGCTTTAATTAACATCACCACAACAAAATGCAATGGCAGTTCAGTGCATATGTATACGTCATTCCCATATTTCTTACTGCCTCTCTGTGTTTATATGGCATGCACAGTCGACATGCTAAGCACACGTTTTACAGAAAACAGCCCAGCACCTGGACTATTATAGCTACAACTCAGCCCACTCACATTCACTTCTTTGGATGCTTATATGAATCAGTGTGAGACATTCACTTCTCTACGCCCACTATGctggtttaaaaaaagtattttcttgtcTCCTAAAGGGGGCTGAGGCCATTCAGAAATTCTCCATAATACATCTTAGGGAATTACCTGAATATGGGAACAAATTCCGCTTTGCTTTCTAGGGAGGagtaatgcaaaacaaacaaaaagtagaAGACGTAGATATCTGAAATGTTGGAAAAGTAAAAAGTTCACAGTGTGTAGTGCAAAGTTTTTTGTGTCGTTTTTAAACTCACAAAACATCTCTGTACCACAGCAGTGAAAGCGAGTTTCAGATTCAGAAAATGCACCTTTCTCAGACAGACAAGACAGATATcgaacaaattacatttcagccGTCGAGCACGTTTCTCAATTTagcagtctttgtttttaatcagtgcCTAAACCAAGGAATacatataacaataaaataaataaatctttgaataaataaatacataaatacatacatatttactaCTGTTTTAGGCCATGGGGAATCATAATATTCAAACCCTATCTATCTCTATGCAGTATTACTTTAATCTGAAAATTTCAGCAGTGTTACTTTGCACAAACAAGGGTTGTTATCCACAACCTTTGCTGCTATGGCATCACTTTGTAAGGACACAGTTTTGATGTGGCATTGCGTGATGTCATATGGAGGTAATAAATTCAAACTCCTATTGTGTGACACTACTAGGTACCAGTCTGACATTAAATCAGTATGTTTTCATAACTGGTGGCAGAGGAAAACTAAACTAAGTCTGTTTAATACtgttacacaataaaaaaatcccatAAGCCAGTGTGCCATTTAAATTTGTTACATCTCTTTGGCAACAATGAACTTATAATATTGGATATTTGTTTCCATAAATatcattttcaaatcattttcttatcttttttctttttctttttttacaaaaatagtATAGACTGCAGTTAAACGTCTTCTATCCTAAACTATTACATCATATGAAGTCcataaaaggcaaacagaaatacatattgttgttttgtgggTAGAATAAATACTAGAACAGCAACCTCGGCACAGTTACCGCGTTACTTGAGTGTAACTAGGGGAGTGGAGGCTGTGTGGCATTTCTCTCTGTGgaattaaaagtttacattttaaccTTCTGAGTGGAGAGAGTTTACatcaatttaaagtaaaaatacattaacttgGGACAAAGGTGGAAGGCCATATGTATCAGAGGGATCATCTCTGattctgaataaaataatctgtactGTGTCTGTTTGGGGATcctaaaaaagtaaacaaacgtgAATAATAATGTTGAGATTCCAGCTCGTCTGTGACACACATGTGGAGTgtattggttttaaaacaatatgccAGAACAGCGTATCTAAAACACTGATTCTGACATGAACTCATTTGATTCCCTCATGTAGAAACTAACACTCAAATTGTGATAAAAAGCGATACTTGATACAGTGAGGGCACTagatgtttcttgtttgtttgtttgtttctgcctTTAAGCAAATGACATGACAGAAAGCTATCCTATTGAAAAACCTGGAACGGGTTCTGAATTCAACCCATGCAAAGCCTGACTCAGGAGCCACAGTGAAGTCCAGGAACCAGTCCATACTGCCTGTCCCAATCCACCCTGTGGCCCACAGGTCAGGTATTGAAAGTGTCTGTAAATGCGTTTCCACCCTGACCACTCTGGATCCAGTCGAGGTTGGGGAAAGCTGAATTCCTGGAGTCTCTTCTTGTggtatttcttcttcttcttttatgcAACCAGTGTTGGGAATCACAGACTACTCAGAAACCACAGGAAATAATCACAACATTTGGGAATACACAATTCAAACTAAGGCGAGAAAAATAAGGCAGGAATATCAAATCCCACACACTATCCTTAACCTATGAAAAAATACTGTGGTATtaccaaatatattattttacccaAGTATTCCCAATTTGATTCACAGAAGAGTTCCTGAAAAAGGAACCACATTCAGCAAATGTTGAACAGTTTCTTCTGGAAGTCTTTCTCTGCCTCTAATACGCACAGACTGGAAAGCTTTTAAACTGACTACAGCTTCTTCTGGTTCATTTTCTCTCAAAGGTATGCAAAGTAATACATCATTTGGCAAACAAACCTACTTTTACTCCAACATCAGAGTGTTCCTCACTTGGGACTTTGGACTCAATTTAAGTCAGACTGCAGAATTTCTGTAGCTATCAATAACAAAACTTTCCCCTTTGAGTCAATAATCATCCGTAGAAAGACTACTAAATCTGGAAGAGACACCGGCGAGATTTGGCACCTCCTAGTCATCAGAGAGAACACAAATCTTTCCACTGTGGAAATGTCACTTCTCCCAAGATCTCCGGGTCAGGGCTGTGTCCTCTGCCGGTTCCTAAAGTGAGACGGGCGCGTAGGGTGTCGAACTGAATAGCTGCCAAGCTGAATGGCTGGCTGTAACAGTCTGGTGCCGGGCCTGGGTGTGCCCGACAGGTACAGCGATGTTCCCCAGCAGCTGATGAAGTGATCGTGTGCAGCTGTGAAAGTAAACTCAGTGTGGCTcttctttttgttattgttgctctcgtcaaaggaaaaaaaaaatatgttacaaATGAGCTTTAATGTTCTGCGACACGTTAAGTTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54132 lncRNA downstream 5710 27049568 ~ 27049842 (-) True G43412
TU54130 lncRNA downstream 8989 27046361 ~ 27046563 (-) True G43410
TU54119 lncRNA downstream 60248 26994372 ~ 26995304 (-) True G43400
TU53911 lncRNA downstream 575702 26479611 ~ 26479850 (-) False AMCG00013258
TU53873 lncRNA downstream 688332 26366979 ~ 26367220 (-) True G43204
TU54146 lncRNA upstream 67538 27126780 ~ 27126988 (-) True G43425
TU54156 lncRNA upstream 99059 27158301 ~ 27158729 (-) True G43435
TU54249 lncRNA upstream 654797 27714039 ~ 27717043 (-) True G43518
TU54335 lncRNA upstream 906770 27966012 ~ 27966233 (-) True G43590
TU54337 lncRNA upstream 1001602 28060844 ~ 28061169 (-) True G43592
AMCG00013280 mRNA downstream 54095 26999574 ~ 27001457 (-) True AMCG00013280
AMCG00013278 mRNA downstream 148586 26903814 ~ 26906966 (-) True AMCG00013278
AMCG00013279 mRNA downstream 163134 26888488 ~ 26892418 (-) True AMCG00013279
AMCG00013276 mRNA downstream 222863 26830584 ~ 26832689 (-) True AMCG00013276
AMCG00013277 mRNA downstream 234575 26813858 ~ 26820977 (-) True AMCG00013277
AMCG00013292 mRNA upstream 86405 27145647 ~ 27159340 (-) True AMCG00013292
AMCG00013295 mRNA upstream 232985 27292227 ~ 27292787 (-) False AMCG00013295
AMCG00013294 mRNA upstream 240585 27299827 ~ 27307855 (-) True AMCG00013294
AMCG00013293 mRNA upstream 277048 27336290 ~ 27339310 (-) True AMCG00013293
AMCG00013297 mRNA upstream 439433 27498675 ~ 27508068 (-) True AMCG00013297
TU53964 other downstream 498228 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 1538589 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 1888794 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 1977308 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 2026548 25025876 ~ 25029004 (-) False AMCG00013216
TU54172 other upstream 213987 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 509522 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 1008971 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 1408070 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 2194154 29253396 ~ 29254316 (-) True G43869

Expression Profile