RNA id: TU54146


Basic Information

Item Value
RNA id TU54146
length 209
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G43425
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27126780 ~ 27126988 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgtctgtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtgtgtgagtctgtgtctgtgtctgtgagtctgtgtctgtgtgtgtgtgtctgtgtttgtgtgtgtgtgtgtgtgtgtgtctgtgtgagtgtgtgtgtgtgtctgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtgtgtgtgtctg

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54137 lncRNA downstream 67538 27055552 ~ 27059242 (-) True G43417
TU54132 lncRNA downstream 76938 27049568 ~ 27049842 (-) True G43412
TU54130 lncRNA downstream 80217 27046361 ~ 27046563 (-) True G43410
TU54119 lncRNA downstream 131476 26994372 ~ 26995304 (-) True G43400
TU53911 lncRNA downstream 646930 26479611 ~ 26479850 (-) False AMCG00013258
TU54156 lncRNA upstream 31313 27158301 ~ 27158729 (-) True G43435
TU54249 lncRNA upstream 587051 27714039 ~ 27717043 (-) True G43518
TU54335 lncRNA upstream 839024 27966012 ~ 27966233 (-) True G43590
TU54337 lncRNA upstream 933856 28060844 ~ 28061169 (-) True G43592
TU54338 lncRNA upstream 935261 28062249 ~ 28062453 (-) True G43593
AMCG00013280 mRNA downstream 125323 26999574 ~ 27001457 (-) True AMCG00013280
AMCG00013278 mRNA downstream 219814 26903814 ~ 26906966 (-) True AMCG00013278
AMCG00013279 mRNA downstream 234362 26888488 ~ 26892418 (-) True AMCG00013279
AMCG00013276 mRNA downstream 294091 26830584 ~ 26832689 (-) True AMCG00013276
AMCG00013277 mRNA downstream 305803 26813858 ~ 26820977 (-) True AMCG00013277
AMCG00013292 mRNA upstream 18659 27145647 ~ 27159340 (-) True AMCG00013292
AMCG00013295 mRNA upstream 165239 27292227 ~ 27292787 (-) False AMCG00013295
AMCG00013294 mRNA upstream 172839 27299827 ~ 27307855 (-) True AMCG00013294
AMCG00013293 mRNA upstream 209302 27336290 ~ 27339310 (-) True AMCG00013293
AMCG00013297 mRNA upstream 371687 27498675 ~ 27508068 (-) True AMCG00013297
TU53964 other downstream 569456 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 1609817 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 1960022 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 2048536 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 2097776 25025876 ~ 25029004 (-) False AMCG00013216
TU54172 other upstream 146241 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 441776 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 941225 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 1340324 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 2126408 29253396 ~ 29254316 (-) True G43869

Expression Profile