RNA id: TU54155


Basic Information

Item Value
RNA id TU54155
length 420
RNA type TUCP
GC content 0.50
exon number 1
gene id G43434
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27158302 ~ 27158721 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caccgtcaaacatggaggtggaaacattatgctttgggggtgtttttctgctaaggggacaggacaactgcaccgcatcaaagggacgatggacggggccatgtaccatcaaatcttgggtgagaacctccttccctcagccagggcattgaaaatgggtcttggatgggtattccagcatgacaatgacccaaaacacacagccaaggcaacaaaggagtggctcaagaagaagcacattaaggtcctggagtggccaagccagtctccagaccttaatcccatagaaaatctgtggagggagctgaaggttcgagttgccaaacgtcagcctcgaaaccttaatgacttggagaggatctgcaaagaggagtgggacaaaatccctcctgagatgtgtgcaaacctggtggccaacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54122 lncRNA upstream 147651 27010372 ~ 27010651 (+) True G43402
TU54027 lncRNA upstream 228049 26872821 ~ 26930253 (+) True G43326
TU54034 lncRNA upstream 235163 26892614 ~ 26923139 (+) False AMCG00013281
TU54035 lncRNA upstream 253339 26897509 ~ 26904963 (+) True AMCG00013286
TU53997 lncRNA upstream 372741 26784953 ~ 26785561 (+) True G43303
TU54159 lncRNA downstream 111307 27270028 ~ 27417787 (+) True G43438
TU54325 lncRNA downstream 909925 28068646 ~ 28072799 (+) True AMCG00013317
TU54444 lncRNA downstream 1230968 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 1522089 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA downstream 1522089 28680810 ~ 28682174 (+) False AMCG00013336
AMCG00013288 mRNA upstream 17703 27130164 ~ 27140599 (+) True AMCG00013288
AMCG00013287 mRNA upstream 40865 27111850 ~ 27117437 (+) True AMCG00013287
AMCG00013283 mRNA upstream 99381 27036615 ~ 27058921 (+) True AMCG00013283
AMCG00013291 mRNA upstream 159622 26981675 ~ 26998680 (+) True AMCG00013291
AMCG00013289 mRNA upstream 176933 26963688 ~ 26981369 (+) True AMCG00013289
AMCG00013298 mRNA downstream 227370 27386091 ~ 27386627 (+) False AMCG00013298
AMCG00013296 mRNA downstream 390084 27548805 ~ 27569295 (+) True AMCG00013296
AMCG00013299 mRNA downstream 434054 27592775 ~ 27609468 (+) True AMCG00013299
AMCG00013307 mRNA downstream 652972 27811693 ~ 27814163 (+) True AMCG00013307
AMCG00013308 mRNA downstream 715772 27874493 ~ 27875484 (+) True AMCG00013308
TU54005 other upstream 346687 26808164 ~ 26811615 (+) True G43309
TU53939 other upstream 618253 26524826 ~ 26540049 (+) True G43263
TU53847 other upstream 900460 26254979 ~ 26257842 (+) False AMCG00013255
TU53706 other upstream 1636621 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 2388154 24768424 ~ 24770148 (+) True G42858
TU54169 other downstream 226944 27385665 ~ 27415286 (+) True AMCG00013298
TU54201 other downstream 430418 27589139 ~ 27590818 (+) True G43476
TU54319 other downstream 775353 27934074 ~ 27935938 (+) False AMCG00013310
TU54454 other downstream 1325552 28484273 ~ 28488783 (+) True G43682
TU54615 other downstream 1945568 29104289 ~ 29104577 (+) True G43802

Expression Profile