RNA id: TU54159


Basic Information

Item Value
RNA id TU54159
length 3712
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G43438
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27270028 ~ 27417787 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attttctagaaatgttttttgttttgtttttttgatgtgTAAAATTTATTTGTCGTTGTACATACCACAAAATACttgatttacatttctttttttatatatatacagatttgcTATCCTAAATACCATATTACatgggaaagaaagggaaagaaattcACTATTTGTAATTCTAAAGGGTTGAATAAAACTCAaccataaattaattaaacgaTGTAGCCACAAGCATGAGGTTCCCTCTTATTAATACAAGATGAAATTCTGAATCTTGAGATTGAAAATGACATTGCTCCAACTGTTAATGTGAAGTCGTGACAATTATCTCTTTAACTGTCAGCGCTTACTTGCATGTTAAACCACCAAGTCCTAATGCTTTGAGAATGACCCACTGTCTTCAGTACGATATCCATTGCATTATCGAAGGAGAAAAAATGAGTTGAGCCATCTGTCTGTCTTGAGTTAGTTGAATGAACAGCTAAAATGTTTGTCATTGCTTCAAATGAGCAAACTTTCTAACTGAAAGGTCAAGGGTCACTTGGTACTGGACCATAATGAGGCAcaaatttgttaaaaacaaagaaaagactCAAACTTCAACCCTTATGAAATCACAGAACAGCCAGTGCTTTAGTGACAGTCCTACCGTGGTACGAGAAACTAATTCAGTGAGTGTCCTATTCTAGTAAATTATGCTTACATTCATTGAGGGCACTACGAATAACACAGGCGTCCCTTTCAGAGCGATTGCAGTAATGCAGATTCCCACCGCGTGTGCGTATCCTTACTACAGCTTCACACGCAACAGAAATTCATTCCATCCGGAGAAATGGGTAGTGAAACACATCTCCCCCTCTTGCATATACAGTGTTCAAGTAGAAAGACGAAAGAGTAGAGCTCCTTTGATCAAAATCTTCACAATTTGGCAACAAGCACAGAATCTAGTCGGAGAAGGTGTGAAAGACTGGTGTGTAGCTTTGTAGCAGTGTGAGAATTTCAGAACATGTGCGATAAGGATGTTTTTAGACAGAAGGTCAAACCGGATGGTGATAAACACGATGCGAAGGCTGCATCTGCTTTAATCCGCTTTTGGATCAGGAAGTTACAACTTGATCTCCTAGGCCGCCCCAACACTCTCCCATCCAGCCTTGGGTAGCAGTTAAGTGTGTGTGCTGCTTTGCAATGGTTATCCAGCTGTCCTCTCTAAAGATGGCCTCTTCTTCAGCTGCGTCCTACTGGCAGAAGGCTGGGGTCCAGAGCGACGGCTAGTGTTGCATTATACAATTAGCATAATGTCAACCTGTGCCACACTGTCACCAAAATGCAATTTACCCTTTGATATATTGCCGTTTCAATGCAAAAGGTCCTGACGTTCAGCACGAGGGGGATATTATTTTACTGAACTGAGACTACGGGTTGCAATTTGTCTATTGATCTACTGGTTATTAGCAAAGAAGGCTTGTGTATCAGCTGAGACCCCCTTGGCTCAGCAAAGTGTACACTGTGCCATTTGAGGTCAGGCCAATGAGAAGGCTGGAGTATAGAATTGAATATTCCCACCCAAACAGAACTCACAGTACAAGCAGGACCACAGTTTACCCCCCAAACAATACAGCCCTTAAAACATACCACCCTAAAAAAAGAATCAACTGACACTTAAAGAGTGTATAAAAGGATGAGACAATATTGCCAATACTTTGAATACTAAACTAAGTACCGTGATGATcgacaaaaaaaatgcaaatgcattcaaaaataatgtTCACTGTTTGTGAAGGCTAAATACCCGTAACACAacattttgtgcttttcttctcctttgattttgtttgttttaaatcgtCACTAAACGTTTTCTGCATTTGGAAGCACCATTATCTCAAAGGAGTGAGTTTTTCAGGATCATGAAGGAacccaataaaaagaaaaccaatgcggaatgttaaaaaaaaaaacacatcagaaagTGGGCAGGACGTTCTGTACAATATGGTTAGGCAGCTTAGTGAATTAATTgcttagaaattaaaaataaattattataaaatatatttctgtacattttacatatatatagcaATATCTCCACAAGTCTTTTgccagaataaaaacaaattaaaatgatgcatCTTTTCAATCCCATCCAAAGTTGTGGCCAGTCATCTGGTAGAACTTCATGTTGAAGGGCCGGTAGAAGTCGCGCANNNNNTGCGCGACTTCTACCGGCCCTTCAACATGAAGTTCTACCAGATGACTGGCCACATATTCGGCTGGGAGGAATAGAGTTACAGTGAACTATAAAGATTTATGAAACTCAATGGAGAACTCAGCCGGCCGGGGGGGCTGAGGCTCGGCCAGCTACAATATTTCATCTTCTTGATGTTTTCAAGATGGCAAAGATTTGGATTCAAATAACCGTTTCAGGAACACCCACGTGCGATTCTCCCAAACTCATTTAAACCAATAAGCGTCTGGAAAGAGAAGAAGTCGATGTCACTAATTGAGGTTGCAAGTCTTGTAAAAGACAGCGAGATGAAGCATTAACACTTTAATGAATTTTTAACTATAGCTTTGGTGCACTTACTGGTATGATAAATATAGCCTGAAACAGATTTCAGAGGAGGAGAAATGTAATTTCACTTTGATGCAGTATTCAATTTCCTGACAGCAGACATTTTACATACTGGTGATTTCTTTCAAGGACTGGGAGAAATGTGGGATACCATATGCcgatattttattaatactgttattttaatatagttttatattattttaatatagttttttttttttcagcattcaGGTACCCATTTCATCCCATTtgttgacacacacacacacacacacacacacacacaaatttaaGTACATGTGCAATGATTTTACTGGTGCATTTCATGTCCTCTGCAAAAGATGgggttttaatatatattcctGTGAAGAGTTTTTGccatatttaaaatcaagccgtgtataacatttgaaattataaacaaatgtatttttgcaagttatttatttaaagtaatgtaCAAGCCACatatataactattttaaataatccaTCACTTGTTTATCCATGTTAGATTTACATACAGATACATAAAGATATTCCTGACACCTGTGTGTCGACCTATTTTTGTGgaattttctttcaatttagaGTATTCTTTAAGTCTAGTGTTTCCCAAACACTTGTATCAGCTCCCCCGAATAAAGACGTTCCCCCGATCAGATAATTATTTAGccttatgtatatatatctacattGAGTGGATATTATCTTAAGACTTCCAGGTAATAATGGGAGGGACGGGGTATTTCCCTTTTTATCAGTAGCAGCAAGTCGTCTACCACTGAAGACACCCACTCTTttaatgatgtgtgtgtttcttttgtgcTTCCAACTGGACTGAATTAATTTCCcttaaagcaatgttttctgcagatctgtgagTTGAAGCTTTGTGATTAAAAGGCATCCCAAGTGCTAttgttatacaaaataaatgctctcGATTTTTGCATGCTTTCAAACACCCCTGTCAGCATCTGTGCCTCCGGGGGCCGCAGGTATCAGTTTGGGAAACACAGAACACTTGGTGCTATTCTCGATCTTATAGCCTTTTATGATGTTTTGTGTACTTAATTTAAgaggatgtatttttttttttaagcacacttttaattaaaaaagaaaaagcaacaggTA

Function

GO: NA

KEGG:

id description
ko03015 mRNA surveillance pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54122 lncRNA upstream 259377 27010372 ~ 27010651 (+) True G43402
TU54027 lncRNA upstream 339775 26872821 ~ 26930253 (+) True G43326
TU54034 lncRNA upstream 346889 26892614 ~ 26923139 (+) False AMCG00013281
TU54035 lncRNA upstream 365065 26897509 ~ 26904963 (+) True AMCG00013286
TU53997 lncRNA upstream 484467 26784953 ~ 26785561 (+) True G43303
TU54325 lncRNA downstream 650859 28068646 ~ 28072799 (+) True AMCG00013317
TU54444 lncRNA downstream 971902 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 1263023 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA downstream 1263023 28680810 ~ 28682174 (+) False AMCG00013336
TU54489 lncRNA downstream 1320336 28738123 ~ 28738753 (+) True G43712
AMCG00013288 mRNA upstream 129429 27130164 ~ 27140599 (+) True AMCG00013288
AMCG00013287 mRNA upstream 152591 27111850 ~ 27117437 (+) True AMCG00013287
AMCG00013283 mRNA upstream 211107 27036615 ~ 27058921 (+) True AMCG00013283
AMCG00013291 mRNA upstream 271348 26981675 ~ 26998680 (+) True AMCG00013291
AMCG00013289 mRNA upstream 288659 26963688 ~ 26981369 (+) True AMCG00013289
AMCG00013296 mRNA downstream 131018 27548805 ~ 27569295 (+) True AMCG00013296
AMCG00013299 mRNA downstream 174988 27592775 ~ 27609468 (+) True AMCG00013299
AMCG00013307 mRNA downstream 393906 27811693 ~ 27814163 (+) True AMCG00013307
AMCG00013308 mRNA downstream 456706 27874493 ~ 27875484 (+) True AMCG00013308
AMCG00013310 mRNA downstream 510921 27928708 ~ 27935009 (+) True AMCG00013310
TU54155 other upstream 111307 27158302 ~ 27158721 (+) True G43434
TU54005 other upstream 458413 26808164 ~ 26811615 (+) True G43309
TU53939 other upstream 729979 26524826 ~ 26540049 (+) True G43263
TU53847 other upstream 1012186 26254979 ~ 26257842 (+) False AMCG00013255
TU53706 other upstream 1748347 25520167 ~ 25521681 (+) False AMCG00013236
TU54201 other downstream 171352 27589139 ~ 27590818 (+) True G43476
TU54319 other downstream 516287 27934074 ~ 27935938 (+) False AMCG00013310
TU54454 other downstream 1066486 28484273 ~ 28488783 (+) True G43682
TU54615 other downstream 1686502 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 2222836 29640623 ~ 29658948 (+) False AMCG00013364

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU395893 True 2463 lncRNA 0.39 1 CI01000136 132326 ~ 134788 (-)