RNA id: TU54201


Basic Information

Item Value
RNA id TU54201
length 1680
RNA type TUCP
GC content 0.41
exon number 1
gene id G43476
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27589139 ~ 27590818 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCattggtattattttattagtgttggcaaaaatgtatttataacagTGACAATAGGAAAATAACAACCTGATATCAGCCACAGACAATTAGATTAGTTTCTCAGAGTAATATACACAAAATGAGTAACAAACAAAACTTCTgggtacatttgtttttaattgcatcatACAAGAAGGTTCTCAAAGTcccttgttttgaaatgtgaagtAACTTGTTTTACAGTAGCAGAAAGATGAACATCTACAGAGATATATAGAGTTTACAACCTTATTGACACAgaaggacaaaaaacaaactagagaaataattattctggaGCATAGGAAGTAACATggcatgacatttgttttaatgtaattattttgcataaaaaGGATAAGGTTCCGTTTATTTCAAATTCCTCACCAACATCAGCTCACTGATCCGTATACATTTGAGCAGAAACTAATTTTACTCTTTTATAAATGCTACAAATCCTTACCTGACAAGgaatactgtttttaaaagccCACTAAAATCAGGCTTTGACGTagtgtcatttttatttaaagaagtaTTTGAATCCAATTTGATAAACAAATATGAgcgttattttttatttattattctcgtttgtttgtttgtttgtgtgtatatatacaatttaacaaccaccccccccccccaaaaaaaaaaaaaaaacataattccttcataaaactaaataaaaaacattttgataaatTACATGGTTAACAAAAACAACCTGGTATGACATGAATGCAACTTCTCTTCAATGTCAATACATGACTGCAGAGCTACTGATTCATTTGCAATActtaatcaataataaaatcatatgtATCTTGGATTACACCcgatttattgtattatttttgaaaagtatGATCCGAAGGAAGTCACAAAGTGGAAAAAGTCTGGACAATACATATAGGGCGATACAGCAGAGCTACCGCGGTTCTATCCAAGGTATTGCGACAATTATTGCTGCCATCACCAGTGCCAAAATAACCACGCCAACCACAGAGCGGGCAACCGGGCAGCACCTCGCTCCTCTTCTGCGTCCTAGTACGACAGCCTGCCCGCCCACTGTGAACACGTCCTCAGCCCCCATGGGTCGACCTTGGCCACTAATGgtaaaaatctgaaaatcagCTGTGATGGTAGGTCTGGAGACGGAGCTGTCCAAAGAGGCCGGTCCGAAAAACTGGGCGAGGTGATGCGAGGCTGGTGGTTGGACGACACAGGACGGATCTGATGTGGACGGACGACAGACATGGACCTGCAGAGTCTGCTCGTCCTGGGTGCAGGTGTGCAAGGGCTGTTTGATGAGAAAAGTCAGGTGCCTGCACATGGGGCAGTTGATGCTCTCTCGGGTGATGGTCCCATCTTTGTTGGCGCTGGACAGTGTCTTGGCCAGGCAGTCGTGGCAGAAGACGTGTCCGCAGCTCAGTTTCCTCTTGGAGGTCTGGAGGCTCTCATAGCACACGGGACACTCATCAGAGTTCAACCCCTCTCGGGGAGACTGGCTCTCGCCTGCAGACATGCTGACGTCTCCGTCCAAGAGCATATGGTGTTTCTCAGAGTTGACTGTTGCAACAGTGGTTTGACTTTGAGATGGTCAAACCCACTGGCATCCATTCAATattgttactaatattattactaagtactaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54159 lncRNA upstream 171352 27270028 ~ 27417787 (+) True G43438
TU54122 lncRNA upstream 578488 27010372 ~ 27010651 (+) True G43402
TU54027 lncRNA upstream 658886 26872821 ~ 26930253 (+) True G43326
TU54034 lncRNA upstream 666000 26892614 ~ 26923139 (+) False AMCG00013281
TU54035 lncRNA upstream 684176 26897509 ~ 26904963 (+) True AMCG00013286
TU54325 lncRNA downstream 477828 28068646 ~ 28072799 (+) True AMCG00013317
TU54444 lncRNA downstream 798871 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 1089992 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA downstream 1089992 28680810 ~ 28682174 (+) False AMCG00013336
TU54489 lncRNA downstream 1147305 28738123 ~ 28738753 (+) True G43712
AMCG00013296 mRNA upstream 19844 27548805 ~ 27569295 (+) True AMCG00013296
AMCG00013298 mRNA upstream 202512 27386091 ~ 27386627 (+) False AMCG00013298
AMCG00013288 mRNA upstream 448540 27130164 ~ 27140599 (+) True AMCG00013288
AMCG00013287 mRNA upstream 471702 27111850 ~ 27117437 (+) True AMCG00013287
AMCG00013283 mRNA upstream 530218 27036615 ~ 27058921 (+) True AMCG00013283
AMCG00013299 mRNA downstream 1957 27592775 ~ 27609468 (+) True AMCG00013299
AMCG00013307 mRNA downstream 220875 27811693 ~ 27814163 (+) True AMCG00013307
AMCG00013308 mRNA downstream 283675 27874493 ~ 27875484 (+) True AMCG00013308
AMCG00013310 mRNA downstream 337890 27928708 ~ 27935009 (+) True AMCG00013310
AMCG00013311 mRNA downstream 345595 27936413 ~ 27946835 (+) True AMCG00013311
TU54169 other upstream 173853 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 430418 27158302 ~ 27158721 (+) True G43434
TU54005 other upstream 777524 26808164 ~ 26811615 (+) True G43309
TU53939 other upstream 1049090 26524826 ~ 26540049 (+) True G43263
TU53847 other upstream 1331297 26254979 ~ 26257842 (+) False AMCG00013255
TU54319 other downstream 343256 27934074 ~ 27935938 (+) False AMCG00013310
TU54454 other downstream 893455 28484273 ~ 28488783 (+) True G43682
TU54615 other downstream 1513471 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 2049805 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 2330249 29921067 ~ 29928697 (+) False AMCG00013375

Expression Profile