RNA id: TU54249


Basic Information

Item Value
RNA id TU54249
length 2527
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G43518
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27714039 ~ 27717043 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGTGAACTAGCTGTTGGGCCTAGAGTTGAGCTTTGTTTGCCATCATAAGTCGTAGTGCATAGACAAGCAGTGAGAACGCAGTCATGTTTCTTAGAAGTCCTCCATTTTGTGCTGACAGCTGTATTTCGTGTCAtttaaacagagagagagaggaagacaaagAAATGGCCGACTTCTTGCAGTCGAAATTTCCCAAAAGCAGTTTGAAGAAAACAAATGCCGTAAAGGACAGGAAGATGACATCTCGAGCCCAGCAAACCTCCACACCGTTTGTCACAAAGACGGGGCTGACCTTGCTCAAAGAGTGCTGTGGTTTCACCTGCTCCATCATGTAGCCGGGCTACTGTTGAACACCGAAGCCAGGTTTTTGGGGACAGAGGGACCAGTCTAGAGGCGTAATGCATGGGGGTTGAAGGACTCTTGAGAGGAGAGGATGAGACCTACTGATGTGCATGCATTGGCCTCGGGAGGGAATGAACAAGCAGTTAGGATAGAGAgtgtacatttgtatgtgtgtccAAGCGATATGTGTTCTCTGACTGTTTCCATcgttcaaaaaaaaaaagcattgtttgtTCCCCTAATTGGTCTGCTTTCTGAGGAGCTGTCCATCGTTTCTACTCCAGTGACTTTGAGCTTCAcattttattgcacacaaaatGCACACGGGAGGAGAATGTCTCGTCAGTAAATAAAGCTATCGGAGTTAGATGTGATCCTTCGTCATCGCCGCTCACACTTTCGTTTGCCAGCTTATATGTTTGTTGATGAGAGACACTGGTACATCAGCCATTTcagcatattttaattgataaaattaaatattatgtcTGTGCTCTTTGATGATATAAAGGTTTTCCCCTAGTTGAAGTGTAATGGAGTTGAGAAGAGTAATCAGAAAATCGTTCATGGGAAAGCAAGAGATTTGTACATACTGTGgtcaaagaataaaataagttgGCATTTATCTCTGGCAGTATTGAGAGTGAAAATGGTTTTCAGAGCAGTGCGGTCCTCTTGTACTATTGACAAAGGAGGATGTTTTTGTCATTCTTGGAAAATAATTATCAGGGTCCTTCAATACTGATTCAAGACACCAAGTGATGTAATAGATTGGTGTCCTCCAGCGTCAAGATCTAAATTAAAGTGTCTGGTCAAAAGTGCCGcacaaaaatgtacactgaATATCAGATTCACGGCaaagatttttttcctttcgCTGACAGCACTTTGATCCGTGCAGGCGTCTCTTGTTTTGGCAGTGACACGACACGGGACTCCAGACTGACACTCCAGGCAGTTTTGTGCTGACACACCATTCAGCTGGACTTGTTCTTTGGTTTCCCGTGACATAAATGCTAGCCTTGTCAATGAAGCCCTGTCCTTTCTGTGCTCTTCATATAATCAAGAGTCAGACTCCCTCACGGTTGCTGTCAAAAGGTTTCCTCCCCAAAGTGTTGGGTGTAGCTCtgctttaattgtgttttggttCACTTTGTTTCTGTCGTCGTTCCACGTATCTGTTCTTACCCTCTGGAAACTGagattagattattttttctccctctctctctctcattgctGTAAAATGTCAGTTGTGGTGGTAATATGATAcagtagatttaaaaaaagaacagtgtTATTCCTTTTGGACATTAAGATCAAACTGAAAACGCTATCTTTCTGATTAACGGCTCTGTCCAGAGTatgagatgtgtttgttttggataGCTAAGAGGTGGCTTTTGTACCATATTCTCATGTAGTGTCAGTCTTCACCCCCTGGTTTGTGCGGTTTGTCACATCTGTGTTCTTCAAGCTTTAAATGAACCAGGGCATTGAGAAGGTCATTGATTTGGTAACTCCGTAGTTTTTGTTCAGTCTTTAAAAGCTGGTCTGACAACAAGAGGATGTTACCTTCTGATGGTCTTCTTAAACCCAGGGGAACAAGACAGCTTTTCGCATCTCTGCTACACAATGTCTGTACCACCATTAAGATAGTATTAATATACCTGTTTTAATGGCGCTGATGttatttttgcacatttctCTGTACTACATGTTTGTCGAGCGAGTTGTGCACCGAATGGTATTGTAACATAGTGTTGGATGGAAGACTTATCTTGTCTCAAACAACAGAATCCATCAAGGAGAATAACTTGCTAATTGATCTacttatatttaatgtttgaagGATGCTTGAATCAATTGTCCTGGATTAATTCTTCTTTTAGTGTCCAGTGTTTCTCTGATTGTAAGCACATCTTTATCCAAAGGGAAAGACATGTGGATAGCCTTTCTAAGTATATGTATCATTTGAGTCAGACTGCATGCTTGAACAAACCGTGTTGAACTGTGTCtgctctgtgtatgtgtatgagcTAATGTACTTAGTAGCTGTATGTAATTGTGCAAATGAAGTGTGAATGCGAGTGCCTTGACTTGTCTTGAATACAGACCTGTACCTTCCCCCTGTATTACCTGACTGGGTATTTTGTAACTGTAAGTATCACaagtaaaaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54156 lncRNA downstream 555310 27158301 ~ 27158729 (-) True G43435
TU54146 lncRNA downstream 587051 27126780 ~ 27126988 (-) True G43425
TU54137 lncRNA downstream 654797 27055552 ~ 27059242 (-) True G43417
TU54132 lncRNA downstream 664197 27049568 ~ 27049842 (-) True G43412
TU54130 lncRNA downstream 667476 27046361 ~ 27046563 (-) True G43410
TU54335 lncRNA upstream 248969 27966012 ~ 27966233 (-) True G43590
TU54337 lncRNA upstream 343801 28060844 ~ 28061169 (-) True G43592
TU54338 lncRNA upstream 345206 28062249 ~ 28062453 (-) True G43593
TU54342 lncRNA upstream 353095 28070138 ~ 28072787 (-) False G43594
TU54394 lncRNA upstream 512367 28229410 ~ 28234706 (-) True G43626
AMCG00013304 mRNA downstream 6667 27687865 ~ 27707372 (-) True AMCG00013304
AMCG00013301 mRNA downstream 33539 27672378 ~ 27680500 (-) True AMCG00013301
AMCG00013302 mRNA downstream 62486 27618773 ~ 27651553 (-) True AMCG00013302
AMCG00013303 mRNA downstream 123328 27590091 ~ 27590711 (-) True AMCG00013303
AMCG00013300 mRNA downstream 132863 27572915 ~ 27581176 (-) True AMCG00013300
AMCG00013309 mRNA upstream 26995 27744038 ~ 27745915 (-) True AMCG00013309
AMCG00013305 mRNA upstream 32589 27749632 ~ 27767228 (-) True AMCG00013305
AMCG00013306 mRNA upstream 57220 27774263 ~ 27788468 (-) True AMCG00013306
AMCG00013314 mRNA upstream 175295 27892338 ~ 27900889 (-) True AMCG00013314
AMCG00013313 mRNA upstream 200879 27917922 ~ 27927327 (-) True AMCG00013313
TU54196 other downstream 144888 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 420966 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 1156715 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 2197076 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 2547281 25163983 ~ 25166758 (-) False AMCG00013223
TU54344 other upstream 351170 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 750269 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 1536353 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 2289721 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 2363993 30081036 ~ 30083345 (-) False AMCG00013386

Expression Profile