RNA id: TU54335


Basic Information

Item Value
RNA id TU54335
length 222
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G43590
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27966012 ~ 27966233 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTACGTTTCATTCACCCATGGCCGGCACTCAGTCACTGTGTCCaggcgggggggagggggagccgGGAGACAGTCCCTTACCTTCCCGGGAGCTTtggtcttgttgttgttgttgttgggggaGGAGTTGACATCCTCGTGGACCCGATCCAGAAGCCAGAGTAGGAATTCGAGAGCATCGTGCTGCGAGTTGCCTCTGAACTGGGAGCCGTACTTTGAG

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54249 lncRNA downstream 248969 27714039 ~ 27717043 (-) True G43518
TU54156 lncRNA downstream 807283 27158301 ~ 27158729 (-) True G43435
TU54146 lncRNA downstream 839024 27126780 ~ 27126988 (-) True G43425
TU54137 lncRNA downstream 906770 27055552 ~ 27059242 (-) True G43417
TU54132 lncRNA downstream 916170 27049568 ~ 27049842 (-) True G43412
TU54337 lncRNA upstream 94611 28060844 ~ 28061169 (-) True G43592
TU54338 lncRNA upstream 96016 28062249 ~ 28062453 (-) True G43593
TU54342 lncRNA upstream 103905 28070138 ~ 28072787 (-) False G43594
TU54394 lncRNA upstream 263177 28229410 ~ 28234706 (-) True G43626
TU54439 lncRNA upstream 377044 28343277 ~ 28347474 (-) True G43670
AMCG00013313 mRNA downstream 38685 27917922 ~ 27927327 (-) True AMCG00013313
AMCG00013314 mRNA downstream 65123 27892338 ~ 27900889 (-) True AMCG00013314
AMCG00013306 mRNA downstream 177544 27774263 ~ 27788468 (-) True AMCG00013306
AMCG00013305 mRNA downstream 198784 27749632 ~ 27767228 (-) True AMCG00013305
AMCG00013309 mRNA downstream 220097 27744038 ~ 27745915 (-) True AMCG00013309
AMCG00013318 mRNA upstream 108308 28074541 ~ 28078702 (-) True AMCG00013318
AMCG00013319 mRNA upstream 162435 28128668 ~ 28130132 (-) True AMCG00013319
AMCG00013325 mRNA upstream 230724 28196957 ~ 28199793 (-) True AMCG00013325
AMCG00013326 mRNA upstream 244170 28210403 ~ 28218058 (-) True AMCG00013326
AMCG00013331 mRNA upstream 526713 28492946 ~ 28495999 (-) True AMCG00013331
TU54196 other downstream 396861 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 672939 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 1408688 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 2449049 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 2799254 25163983 ~ 25166758 (-) False AMCG00013223
TU54344 other upstream 101980 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 501079 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 1287163 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 2040531 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 2114803 30081036 ~ 30083345 (-) False AMCG00013386

Expression Profile