RNA id: TU54344


Basic Information

Item Value
RNA id TU54344
length 4575
RNA type TUCP
GC content 0.42
exon number 1
gene id G43594
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28068213 ~ 28072787 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgttttatttgcagtattaaaaataaaaccatatatCATGTAAAGCAGACATCTTAGGTAAATACAAACCTTTGTTgtcattataattttataacGTGTGTGCTAGGCCCATTTTATACCCACCCTTCAACAGCTGACAAGATGGACTTGATTGAAGTTCTACGTTTGTGCTTTACCCTCCGACACCAAGCCCACCGAACAGAACTCGAGAGTCCACATTATTTCACATCTACAATTATTTACAAAGCAGGTATAAATTGTAAAACCTTACAAAAAAAGGATATAAAAACATCTCAACCCCACACATTTCACAaagtactgaaaaaaaaaaatccttcattCACATActaagttttttctttttattcttttccctcattattttttatttctgtttttacaagTGCTCATTTTGGTAAACATTGTGATTGGGTGCTTGTGGTGTATGGATGTAAAGAGAAGCAGGAACAAAGACATTAAtattggaaacaaatacaaaatgcaagcTTTGGATCTTGTTCAGATTTTTAATCCTCTGTTCCTTTTCTTCTGTAAAGCAATTCAATGAAACAAACCcgaaactaaacaaataattaaatgtgaactGCACTGGTAATATCCGTCTGAATATGGATGTGCACTCTTGGGCCTGCAAGATAAGACGTAAATGCAGTACAAACTTTATAATAAAGGCCACTGTACAATTATGAtaatcaagctttttttttttcttttacattctCTGACTAATGCCTTTTACATACAGCAATTTGGCAAGAATTCCTTCGAGTGGAATTACATCTAATAAGGGACAAACATACTGAAAACCAAAACTTTGCTGTTGACTTCTGGTTTGTCATTAAACCCAGAAGTTTTAATGATCACAGACCAAAAGAAACCCCCCCACCGCCTGCCGTTTTTTCCAGAAAGCTATAGAGATCTTGTTGGGACTTTATGTGCAAGAGGGAGGATCCCGGCCACTTAAGATTGCACTGCCAATGATCTTGAGAAGGGTTATGACAAGCCACTTACACAATTAATGATGTAACTTTGggaaaactgagaaaaacagAATCTGGAAATAAATGGTTCTGTTGAGCAAGAGTTCATAGTCATATCATCGTTCTGTGTGCAAATGATAGTAAGTGgtgttaaaaaaatgacttgAATAGTGTAGAAATACACAATCTGTGGCGAAACAACCATTTTAGCATTCATCCCGGTAAATTCTAAGAAAACAGCGCCGCTGGGAGATGTTAAATCGGCAGACGACTCCAGCTTCCACATAAAAAGCAAAgatgcagaaaataaacagttagATTCATTGAGTAATATGTGATTTTTCAGTTCCCCTTGGGGAGACCTCCATTACACTTAACAGCAATTGATCAAAGTAATCGTCGCACTCAGATAAAACTGCAAAGAGCTGCCAGCATTTTGTTCTAGATGTAAAAGGGCTGAAAGGTTCCTGGCGTGAGGAATTACTACGACCGAAGGGATGGTATCTGGGATGATTTATATCCACCTGGGAAATCTTTTAGCGCACAAGTTTATGCATATGAAAAATGTGAGAGTACTGTTCCTGCAATAATAACTGCAAAAGAGAAGGATGAAGACTCAATTCTGTACACAGGACCCCGGTGCATTAATTAATGCCCCAGTCAGGCTGCATGTGTGTCATATAAGTTACGGCACAACGTAAAGACTGCCATACAATGAAAAATGAGATGTAAAGCACAGCAGCTGCTCAGGGTATCATAATGCGAAAAAAGTCTGCAAGTTTGAAGCTCTTTCTGGACGTCCTCTGCAATGGTGTATTGCTGTTGTGAATTCGTAAAGGTCATGGATTATAAAATCGCCAACCTTATGCCAAGTACATGATGAACTCTGTGAGGCCAGACATACACTCtaagaaagagaaagatttTAACTATGATGCTTCCAGCCAATTTATTTTCTGGGAAACCGGACTCGTAAAATCAAATTGGTCTCCAAGCCGaacttcagtgtttttatgCATAGCTGGATTCGGACTGCCTTTGTGTTCTAGGTTAGCTCGGCTGGTGACATTTCTTATCGGATACAAACAAGGTCTAGATTTTAGTGATCAGACTGAATTGAGCAGTACGTCAGCTTCTCCTGCATAAAGACCAGGCCTGTGCCGAGTTATTCTCGAAAATGTAACCCTCTTCGGTCAATGTTAAGGGGGGGAGAGCCAATGGGAGCTCAGACAAAGCGTGTAGAGAGGACTTGAAACAGCAGAAGGAATGGGAGTGTCAGAACAAACCAGCTTTGACATTCAATGCCAAGGAGTGGTGCCAAAGAACTGAGGCGAGAAGGCATGGTCACATGTCACTGATGGCTTTTGTATGTGATAAAACACTTAAGTGGTTATCTCTTTTGTTTGGATTGATTTTTGAAATTGGGGTTGTTAAGCAAATGACCCTGTCTGCTTCCCTAAACACAAGCAACGGCAAGGTGTGAAGTCAGTTTAACAGTCTTGTTGCAAATGTAAACATGGTCACTGCACTGCCCCAACACTACACTCAACACATTGCGTGTTCTGGAGACGTTATAAGCCTCTCTCATGAACACACTCTGCTGACCCATCTTACGTTACATGATTTCTTTGGAACAAACTGATCTAAGTGATCAatgaaaaaagataataaacatGCCTTATctgatgaagagagagagagagagagaggaaagacctggtaaaataaattgtttgtcCATCTCAGAGTACAGGCTACTGTTGATTGTCAGTGGAAAAAAAGTGTCCGGTTGTTTCATGTTCATTAACACTGCCTTTCTTAGTTCgttttttgaaaattaaaaatgaatccaTTTAAACTACTGATGCAGAAAGTTAATGAAGAAAATGGTCTATACTTTCTTGGGCCAGTTTCAGATTGTCActttcaaacacacactgcaggcaAAGTAAAGGTTTGGTGGTGTTGGCTTTataaaaaaagtgcaaaaaagtaaaaaaaaaacatttttgtatcgatacagtatttgtattatttttgtcatcaCGAGCCTTAAAATCTAGCAGCCATTATGAAATACAAGcacaaataaaatctgttcGTTATTCACAGAGCTCGGCTTGTTACGGTGTGGTTAGCTAAGTTAGTACTAACTGATATGTATCTTTTAAACCACTTCTATTTACAAAGAATGCGGGGAGTGAATTGCTTTAGTGGTgccatacaaaaaatataaataaaatagtcatCTTTCTTCTGTTTTAGATTGTGTTTCTGCATAGATGTCTTGTTTTTCTACATGTCGCTTCCAAATTCcatacaaaaccaaaagaaagagggaaagaaaaataaatctgagccTTTTCGGGAAACTCAGTTCATGGTGTTGAGATACGAGTGCCAGATCTGTGTGAACTAGACATGCTCTTGTTGTACACTTGTATCCAAAGACGTTTGTGAACTGGAAAATCAGTTTACAGAGGCACTTACTGTCAGCTTAGGTGTCACGAAGACACCCTGAACAAAAcgataaaaaaacagaactgataAAATCTAAAGAAACACCCATTCTGCTTAAATCTGAGCTTTTCTCACTCGATCTCCCCAATAACACAACTGCCTTTTCTCTGCATATTAAAATGGCTGCTAATTCCCCACGGGTCACATCCAGCCTGTTGTTTCTCTCGAGACGAGATCAGCATCTCGACTGAGGACTCCTTCAGCGGGAGTGGTGCATCTTGGGAAACGAGGTACACGTTCTAAACTGTACACTTGGTACATATTGCTTGACTTGGAGACGCTTTGAGTCGGGTTTTGTATTTTCCCTCCCACATCTTCAGAAGCTTGATTCAGGCACTGACTTCTTCCTCCCCAGAGACGCGGTGCTGTAGCGCGTCCGCTGCAGCGTGGCGTAGGAGGGCTTGTCGGAGGCGACGCTGCGTGGCGGCACAGGGTTGGACAGACCGTTCTTGTGCAGAGAGGCGGTCCTCCGCAGAGTCAGCTCGGATTTGCTCTGGATGTTGGAGGAGCTCTGGGAGCGCTTGATGTCCACAGCGGAGCGGCTGACCCTGCCATTGGCCAGCTCCTCCCTATTCCTGCTGCTGGTGGCCTTGCCCTCGGCTGCCCTGTTTAACGTGCCGTTGGAGAGAGAgatcctggaggagctgctggTCGCCTCGCTGCTCCTGTGCGCCTCTGACTCCCTGGACTTCCTGGAGTCCTTCTTGAGGAAGTTGGGTTTTAAAAAGGAGAACCTGCCTTCGTGGCTCCTGGTGTCCTCGGTCCTCCTCGCCTTGTCCTCCTCTGGGGGCGACTGCTGTTCACCATCCCCACGATCCCTGGCGCCCGCTAAAGCCTTGCTCCTCTTCAAGGTGGTGTCCCAGCTGGGTGGCGGATTGGCGCCTGACTGGATGACCCCACTGGAGCTCCTCCTGGGCCCCCCTGCAGAGGTGTCCTCAGGCTTTCCTGGCAGATCCTGCTTGGTCTTCTTGGACGTCCTCCTGGTCAGGGTGCCGTCATCCTTCTGTTTGCTGCTCCTCCTCGAGGCGCTGCTCCTCTCGCTGGCCTGTCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54338 lncRNA downstream 5760 28062249 ~ 28062453 (-) True G43593
TU54337 lncRNA downstream 7044 28060844 ~ 28061169 (-) True G43592
TU54335 lncRNA downstream 101980 27966012 ~ 27966233 (-) True G43590
TU54249 lncRNA downstream 351170 27714039 ~ 27717043 (-) True G43518
TU54156 lncRNA downstream 909484 27158301 ~ 27158729 (-) True G43435
TU54394 lncRNA upstream 156623 28229410 ~ 28234706 (-) True G43626
TU54439 lncRNA upstream 270490 28343277 ~ 28347474 (-) True G43670
TU54457 lncRNA upstream 397547 28470334 ~ 28470537 (-) True G43685
TU54458 lncRNA upstream 402321 28475108 ~ 28475326 (-) True G43686
TU54459 lncRNA upstream 402669 28475456 ~ 28476100 (-) True G43687
AMCG00013313 mRNA downstream 140886 27917922 ~ 27927327 (-) True AMCG00013313
AMCG00013314 mRNA downstream 167324 27892338 ~ 27900889 (-) True AMCG00013314
AMCG00013306 mRNA downstream 279745 27774263 ~ 27788468 (-) True AMCG00013306
AMCG00013305 mRNA downstream 300985 27749632 ~ 27767228 (-) True AMCG00013305
AMCG00013309 mRNA downstream 322298 27744038 ~ 27745915 (-) True AMCG00013309
AMCG00013318 mRNA upstream 1754 28074541 ~ 28078702 (-) True AMCG00013318
AMCG00013319 mRNA upstream 55881 28128668 ~ 28130132 (-) True AMCG00013319
AMCG00013325 mRNA upstream 124170 28196957 ~ 28199793 (-) True AMCG00013325
AMCG00013326 mRNA upstream 137616 28210403 ~ 28218058 (-) True AMCG00013326
AMCG00013331 mRNA upstream 420159 28492946 ~ 28495999 (-) True AMCG00013331
TU54196 other downstream 499062 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 775140 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 1510889 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 2551250 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 2901455 25163983 ~ 25166758 (-) False AMCG00013223
TU54456 other upstream 394525 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 1180609 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 1933977 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 2008249 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 2008249 30081036 ~ 30083345 (-) True AMCG00013386

Expression Profile