RNA id: TU54394


Basic Information

Item Value
RNA id TU54394
length 4242
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G43626
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28229410 ~ 28234706 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGCAAGAAAAACACCACAGTGGCAACTTCATATCaatctttattgtatttagaaACTCACGCATCAAATCCTTTACCATTTACATCAGGGAGAATGAGAGCAGTTAAACCTCATGCCTTTTCCAGCAGGCCTGATGCACTACAGGATGGGCTGAAATGAAAAGATACATAAAGTGCTTCGGTTGATGCTttcgaaaaagaaaaaaaaaaaaaaaaaaaagtcaaaaacaaTGAGAAACTGGACTGAAGTTCCATGGCTCACACAGATAAggggggataaaaaaataagcatgaaAGAGTTCAAAGAAAGCAAGCTCAGCCCAGGATGAGACTGGACTTTCCCCCAGGGGGGTTTCTCCGCCCGCCTGGCGCGGCAGCAGGTACTGTGGGTGCCGAGGGCTGTGGCGCCTCCTCCTTCTGTTCCGGGATGATTTCGACCTCCTCCGAATTTTCTATGAAAATAAAGACCGTTGTGGATCTCCATTCATAATGACAGACAACAGCAGCTCATTTACAGTCAGACACTGAATTGGGGACCGTGTGCAGGTTTGTTACAACCAGACTAACATCCACTTGTTGTTCCCCAAAATGGTCTTCAGCTTTAGGAAACTTTACTTTAGGATGTTGGTGGGCCACATCTCGGAGATGCCGACACTGTACGTGAAAGCGAGGGGGAGTTAAGCAGCTTGTAATTAACCAAGTCCAAACTCCAGCTTGTGCACTTACCCTCAGAGGAGGTGAAGTGCCTTATGGTTAAGACTCACACTGCTGAGTACAAGatgatttcctttttaaacCACAGCCGAGCAGCACATTTTTtgtgcatgtatgtttttacaGCTTAATGATTAGTCAAGCATGAggtttccccccaaaaaaaaataaaaaaatctaaatgtcgAACGTTTAAATGGGAAAAATCTTGACATGACTCCATTTCCAAGAACCCAATTTGTGGTAGCCCATGTCTCATGCACATCAGCTTGATTTATCTCCTGTGCATGTATACATTACAAGCTTGTAAAAGACTATGGGAGTGAAAAAGCAAGTTTTTAAACTGCGGACCACCTACCACCAGAATATTTAAGGAGAATATAAAGACCACTGAAGGGATGACTAgcttaatatataaataacaggataaaggttttttttaaatagcttgtCAAAACTGAAAATGGAAGCAAATGCTCCACGTTGAAACACACCCCAGTCTGTTTGCTCATatggcattaaaataaatactaaaggCTATAGTTTGATAGCAATCAAGGTTTAAACCTCAAATCTGTATGAGGAGTAATAAGCCAGTAGCAAGAGCCAGCCATTCCCCATTACTGAAACTGTTGAACTGTAGCTacaccctccccaccccctaTGAAACAGTGATTGAGATCTTAACACAATGCTCTTttgacatgaaaataaaaggaatatatataaaagatcaAACAGCTGATTTACAAGATTAATTTAAGGATGTTTATTAATCCTGAAGGGGAATGTTCGACTTCCCCATTATCAATACTTGACAAGAACCTGTAACAATGGCATTGCAACATTAGATGCACCTGACTGACTTTTATCCCTGTGTATTGTATGGATTAAGGACAATCGCATAAGAAAAGGATGAGAATGTGTAGACAATGTGAAGCCACCTGGAGCTGCAGAATAAATGCGTTTTCACTGCTGATGTATTTGGAAACCCTAAAGTGCAACGAAACCTATAATGTATTTTAGGTTACACTGGATTATATAGAGCTATTGTGCAGGAATTTTAAAATTGATACAAATGCACCCAATCCTCCAattaaaggtttaattaaaatggtaaagtaATCCAGGCAATTAACAATCGAATCACAAATTAGTTTAAAACTAGCAACAAAAAAGCTATATAGatctatatagatatacatcTTCCACCTCCTTAAACCTAAGAGGCCAACGACTCCAGGAATTAATGCATGTGGTTTGGACCTTTTCAATCTATATTGTATATTCATTAATCCAGTgctatacacatttaaaatacttgtcAAACCACACAATTGCATGCTATGTATGagtatacatataaaaatgagtaACTTACCAATAATTGCCCTTTCCATTTCACCATCCTGCAAACAAATGGACAAGCATTAAGACTAAACTCTTAAAAAGCTTCAGAGTTTTGACAACTGCAAATCAAATTCTAGTAACCGTTCATAGTGTCCAGTATTTGTTCACCAGATGTTCAAAGGGTTTTAGAGTAAAATATAGTTTTGGAGTAATTGAGACCGAATGACAGATTAAATTGTTGCATTAGACTGTGTACCATATAATCCAGTGAGATACTCACTCCGGTTTTTGCTTCCTCGGAGACGCTGTTGGACTGCACAGCAGGCTGGGTGTGACATCGTCTGAGGGGAGCGGAGGGCTCGCCACTAAAGATACCAGAGGGCTTTCCACCTGCAAACAAGGACAAATGTGCGTTTACGCCAAGTGTAGTAAGTAGTTTTGGGTTCCGACTTCAAGTGTCAAGTGAATTACAAATAAGGGAATCTGTTTTAATAGATCAAAAGCCTCAGAAAGCAGAAGTTAATTTAAGgattataaatgcataaagATTGGAAAATCTAGGTACACTATTCAAACGTCATACAGGAAGTGAGGAAACCATTTGCATTGTTCTGAATTCTGGCAAATGGCTTTTGGCCTCCATTAACAcccaagacaaaaaaaagaggggggggggttataaCTACACAAGCCTTTCAATACAACTTGCTGTTTGACAAGTTCATTGTAAtgtaatagaaaaaacaaaaaacaagagcaGGCTTAGAGATTGATTCCAAGCAAGCACAAGAATGCTTTAGTGAATGGCTACTGAAACTTCAAACTATCTGAATGAACTTATTACGCAACAAGTGACTGTCCACAGATTTAAAGACTGTTCTAAAGCAGGGTCTCAAGGGGTGTAAAATGCTCAGATATTTTGAACCCccaaaaatgcatttatcaaTGTAAATCAATGTAGAGGCTCTGTAAAGCAACAGGAATTGCTAAAATCTATTGTACATTTATACAATACCTTTAAAgcaaaactgacattttctaATAAAATTCTATATAGATTAAAAATGATCTAAATAGATCTGAAATCTGGGGAAAATGTCACCCCTCGTCAATTTCCCCTCACTTTACAAGTAACAATTTGCATCTTACTGAGGCCATATCTTCAGAAGTTGAACATCTGAAAATTGCTATTCAATTTCTCAGTCTGTTGACCATGCCTTGTTACCATGCTATACACAAACACTGCCGATTCTTACATTTTAAGCAACCGAAAAACACAAAGTGGGGGATTTATGAATGATCAGTCATGTCCCTGAATAGTTCACAGCAAATAACTGCCTAATCCAGGCACTGGTTATAGTACATATGAAATATCTGCTGGGTAAATGCTTCTTAATCCAGCCAGACAGACATTGTGCAATCAAACACCAATCCCCCtgatcatacatttaaaatcaaatacaactTAAACTCCAGCAAGAAACTAAATGGGGAAAACTGCAAGATTGCCTTTTAGTCTGTTGTGACCATCAAAAAACAGATGGAAGGGCAGGGGGCATCTAGTTTGCTTCAGTTTCAGATTAAATCTTTGCTCATGCAGAAGGATGGGGAAGATCTAAGGAACCCACAGGATGTAAAACTGGTTTATTGGATTCAGAAACTGGTTGAGGATTTAAATCCCTACAGCTAACCACTAATAATCTAGAACTCCCAACACCATGGAGGAACATCCAGCCAAGATTTAGGAATCGGTGCACAGCCCATTTTCTGCAAATGCTTGAAGTACAGACACTGGCTGTCTGGCTGAAGGGAAGGTCAGTTGGTGTGAGAGCTGGGAACCCAATTAATTGGGGCTGTGGCTGGAGGGACCTTTGAGAAACCCTGTGCTACCTTAACATGAGCTGTGAAACAATAAGGGCGGCAGTATCTACCCGGTGGATTGTTCCTCCTGTGAGCGTGGGGGTCCTCCGGCTCCGCGAAGATGTTGGAGGCGGTTCTGTTCTTGCGGGTGTTCTGGGCTTTGCCTTCCTCGTCCCCATTGCCAAAGGAGATGTTGGAGCCTCCGCCCGGGGGCCGCAGCACCCTGTGAAAGGCCAGCGGTGAAGCCATCAGTGAGGTCCGCACACAAGCACTGCAGCACCACCCTGCTGCACACAGCCTACAACAGTCATCTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54342 lncRNA downstream 156623 28070138 ~ 28072787 (-) False G43594
TU54338 lncRNA downstream 166957 28062249 ~ 28062453 (-) True G43593
TU54337 lncRNA downstream 168241 28060844 ~ 28061169 (-) True G43592
TU54335 lncRNA downstream 263177 27966012 ~ 27966233 (-) True G43590
TU54249 lncRNA downstream 512367 27714039 ~ 27717043 (-) True G43518
TU54439 lncRNA upstream 108571 28343277 ~ 28347474 (-) True G43670
TU54457 lncRNA upstream 235628 28470334 ~ 28470537 (-) True G43685
TU54458 lncRNA upstream 240402 28475108 ~ 28475326 (-) True G43686
TU54459 lncRNA upstream 240750 28475456 ~ 28476100 (-) True G43687
TU54460 lncRNA upstream 242449 28477155 ~ 28477508 (-) True G43688
AMCG00013326 mRNA downstream 11352 28210403 ~ 28218058 (-) True AMCG00013326
AMCG00013325 mRNA downstream 29617 28196957 ~ 28199793 (-) True AMCG00013325
AMCG00013319 mRNA downstream 99278 28128668 ~ 28130132 (-) True AMCG00013319
AMCG00013318 mRNA downstream 150708 28074541 ~ 28078702 (-) True AMCG00013318
AMCG00013313 mRNA downstream 302083 27917922 ~ 27927327 (-) True AMCG00013313
AMCG00013331 mRNA upstream 258240 28492946 ~ 28495999 (-) True AMCG00013331
AMCG00013332 mRNA upstream 267316 28502022 ~ 28521437 (-) True AMCG00013332
AMCG00013339 mRNA upstream 537227 28771933 ~ 28777474 (-) True AMCG00013339
AMCG00013348 mRNA upstream 739984 28974690 ~ 28989005 (-) True AMCG00013348
AMCG00013349 mRNA upstream 756731 28991437 ~ 28996380 (-) True AMCG00013349
TU54344 other downstream 156623 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 660259 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 936337 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 1672086 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 2712447 25516080 ~ 25516963 (-) True G43070
TU54456 other upstream 232606 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 1018690 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 1772058 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 1846330 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 1846330 30081036 ~ 30083345 (-) True AMCG00013386

Expression Profile