RNA id: TU54439


Basic Information

Item Value
RNA id TU54439
length 3145
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G43670
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28343277 ~ 28347474 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGTCTTTATTAAGATGGAATAGGAAGCAGGGAGTGCTGTCCAGTACATTGAagcaaagcacacacacaaaaagaaaccaagcaaaagaaagaaagaaaaaaaaaggtctgaCAAGAGGTTTGTAAAGAAGTTGAGCCACAATGACCCAATGCAAATTCCCGTTATCATTTAATGATATCAAagcataaacaataaaacaaaaataaatttgcaatctttatttttgaaataacatGATATCAAACataaatttgttatttttatacaaaaaactttgacacaatgtaaataaaccTCGGGCCATATTAATAGAGTTCTTGTTTCTCAGAAGATTTTGATCTTTGGGTTCTCTGGAGCACATAAAAAGAAACGCACTCcgatagtttttctttttgttgttgccatTTCGAGCGTTGACAATTCAAGAGAAGTGctttacagtttacatttcGTAATTACTGAGATTCTgattgaaatggaaaagaaagagaaaaatgacCACAGCCTATTGAAACTCTGCCATGAGTTGAGTTCACACAAAATCAAGAATGTGAATGTCAACggaaagacacacaaaaataaaaccacattcaACATATTCTGATCCAGTGAAGTATTTGGTCTAGTGACAATGGCGAGGGGAAGCTCATCTGAACGTGACTTCACACTGCAAGAGATCATTGATGCTATTCCTTCCCCTCAGAACTAAAATCCTGCCATATTATATCACTGCGATTTAAGCGGTTTCTTTTTATCTCCAAAACAAGAATCGATTTTCTTTTCATACCACTGGAACAAAAAGCTTTGAGAACAGGAGCAGCAAGAAAGCATTTCGTAAAATGAgaacaaaaattatattaataataatgaggacCAACACCCACTGGCATGCATggcaataaaaaacagatactACACTCAAAGAGTCACCTGATTGTATTTCTCCTCCACggctttttaattgaaatctttGGAGAAACTAGAGGTTAATACtggcaaccccccacccccacgccCTGCCCCTACATGGGATTGGGGGTTAGGAGGTCCAGAATGCATTGataagtattgttttaatacaatgttacacaagaatgaaaaacaattaaataaggATTGACATGAGAAgttccttttagtttttttccccattagcGGACTCCCAACGCACTATATACTATAAATCGGGATTTCAGGCGAGACTGGTATTGAGTCTGTGCCCCTGAAACACCTCGGCATCAACGTGTTGTGGAATGGTTTTGTGCCTTCTGGTAAATCGACACCGTATCAGTCCACAGACAACAGACAGACGGGCACCACCGGCTGCGTCTCAACTGATGAACGACGTTTGACATAAATTCATCACTTAATCTCCCATCGACCAACGCCTACACCACCTCTAATTATAGAACCGTGCTTGTGAAACATGAACAATAAATAAGAGAGTAATACTTAATAAAAGACAGGAAGAGCACTCAATACAGACGACGGGGGATACATGGGGGATTGTGTGTgggacgggggtggggggtttacAGACCACAAACTCGGTACAAAGGGTATACAGATTTCTACTTAAGTATAAATACACTTTGTTTTGCCTCTGTTATATAGATTTGTTTCTCGTTTAGAGCAGGAAGAACATCCTTTATTATTTGGTTTACATAAGGCACAGAGAGTGTTCCCTAGTTCACCTCCCCGacacataaaatgaaataaacataatagagAATGTAAAACGTAACAAAGGTGGCGAGGACTGGGAGTCGGGCCTATTGCCACCATACCGCATCACAAATCGGCAGATGATATTGGCAAGTGTGCTGCTCAAGGTCTGCGATGGAAACCAAACCAacgaaaactaaaataaatcaaaagctgCTCTGCACTGCGTTGCATTTTATCATCAGTGCAGATGTGTCATTACCTACTGGACGTTCCTTACTatactacacacacaccacGTTGGGTTTTtgctgtggatttattttttaaaaagccaacAAAAACCTGTCTTGCTGCTTCCTCGATATCACGATTCCTACGCGTATGGTCACGTGTACCGGAACACCCACTCTCTCCAGGCCCTGCTTTGCCCTGGAGTTGTAAGACCAACTAGAGTTTCTTCCACCTCGTCTCTTAACACACCACTTCTGTGGCCTTTTCGGAAAGTCTGCTGTGGAATTCGGCGATTTCTTTGCGTCTTTCATATCACGCGcgatttttcttgttttttcggAAGCACCATAAGATACAGCGAGTTGAGTGCATTTTTGTTCATTGTTAACATCTTGCTAAGCAATTTTCTAAATAAAGACAAGCTCttaaagaaaaactgcaaaattgcCAAATCATTTGATTCCCTGTGTTGATCTTGTCATCATTCACTGGACCACCGACTGTAggtgacattttacatttaactcGTGTCTCAATCACCCGTCCTACATGGAGAACTAACTGCTCCACTTGTCTAGGATAGCACAGGCGAAAGAGGaacaatgcaaaaatatacatgtgaagatgacaaaagacacacaaagcAAACTTTTAGTCTCAGCTAAAGTGGCGTACAATTCACAGCAGtccccttttcttttatttcacaatCCCAAACTTTTAAATGCGACAGTGTCACAgtgatttatataaaataaaaaaatgataaaacaaaaatatacgtacagaaggaaaaaaaaaaggtctatACTGGATATTGGATGCGTGTTCGGTCAAGTGAGCAGAAAGCCAATGCTGGAAACAGATtttttttttttcttttttctttttttaaacacgtaaatgtttttgtctggTGGCGGTAgtggaaggggggagggggcgtAGTTTGTGGGTAGCAGGTGGCAAAGCAGGCTACCCAACAGTCGGGATGGACAGAGGCCAGGGGTTTCGGAGAAGGACCGGAAGCCAATTACATCTCGTTGGAGGTGACGTCATGGTCGGAGACGCCGTTTGCGTGCATGTTGCTCTCGTTCAGCCTCCGGACGCGGTACGCCTCATACAGGATGCTGCTGGTGATATCCTTGATGTTCTGCATATGTGTTCTgggtaaaaacaacaacaaatcaacaaggagagaagaaagagaaTTACATCACATAGGGATACTCTACCCATAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54394 lncRNA downstream 108571 28229410 ~ 28234706 (-) True G43626
TU54342 lncRNA downstream 270490 28070138 ~ 28072787 (-) False G43594
TU54338 lncRNA downstream 280824 28062249 ~ 28062453 (-) True G43593
TU54337 lncRNA downstream 282108 28060844 ~ 28061169 (-) True G43592
TU54335 lncRNA downstream 377044 27966012 ~ 27966233 (-) True G43590
TU54457 lncRNA upstream 122860 28470334 ~ 28470537 (-) True G43685
TU54458 lncRNA upstream 127634 28475108 ~ 28475326 (-) True G43686
TU54459 lncRNA upstream 127982 28475456 ~ 28476100 (-) True G43687
TU54460 lncRNA upstream 129681 28477155 ~ 28477508 (-) True G43688
TU54461 lncRNA upstream 132611 28480085 ~ 28480483 (-) True G43689
AMCG00013326 mRNA downstream 125219 28210403 ~ 28218058 (-) True AMCG00013326
AMCG00013325 mRNA downstream 143484 28196957 ~ 28199793 (-) True AMCG00013325
AMCG00013319 mRNA downstream 213145 28128668 ~ 28130132 (-) True AMCG00013319
AMCG00013318 mRNA downstream 264575 28074541 ~ 28078702 (-) True AMCG00013318
AMCG00013313 mRNA downstream 415950 27917922 ~ 27927327 (-) True AMCG00013313
AMCG00013331 mRNA upstream 145472 28492946 ~ 28495999 (-) True AMCG00013331
AMCG00013332 mRNA upstream 154548 28502022 ~ 28521437 (-) True AMCG00013332
AMCG00013339 mRNA upstream 424459 28771933 ~ 28777474 (-) True AMCG00013339
AMCG00013348 mRNA upstream 627216 28974690 ~ 28989005 (-) True AMCG00013348
AMCG00013349 mRNA upstream 643963 28991437 ~ 28996380 (-) True AMCG00013349
TU54344 other downstream 270490 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 774126 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 1050204 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 1785953 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 2826314 25516080 ~ 25516963 (-) True G43070
TU54456 other upstream 119838 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 905922 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 1659290 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 1733562 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 1733562 30081036 ~ 30083345 (-) True AMCG00013386

Expression Profile