RNA id: TU54456


Basic Information

Item Value
RNA id TU54456
length 595
RNA type TUCP
GC content 0.62
exon number 1
gene id G43684
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28467312 ~ 28467906 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGCTTCTGCTGTGTCTCTGCAACTTGTGCAGGAGGTGGCAGCTCACACAAACCCACTCACAACTCACTGTCCTCCTAAAGAGGACCAACACAGGACCCCTGCCAACCGGATTTCACTGGCGATGATTAGAAGTCTTACCTGGCCCGACGAGGGGGGACCGGTTCTGCGGGGCACTTGTTTGGTGAGGTGCTGCCGCCTCGGACGCGCTGTTGTTGTTGGCATTGTTGGCGGCCGTGTGGCCATGGTTCTGGCCTGGAGGCTGGCCGTGGTGcgggtggtggtgatggtggtggtggtgatggtggtggtggttgctgttgttgttgctgggGGCAGCGgggttgttgttgctgctgctgctgctgttgttgggTGCCGGGCTGCTCTGGACCACAGGGTTGTTCCTGTCCCACATGTTGACAGTCTTGTTGCAGGAGCTCGGGTCACCCCAAGCTGAGGTACCGTCGTCAATCTCCATCTTGCGCCGGATCGAGGGAGGGGAGGGCTCTTCCCACCCGGTGGGCTCCCCTCCAGGCTCCTGTTTTACTGGCCCTCCTGCTCCTCCAGGTCCTCCAggtcctcctccccctcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54439 lncRNA downstream 119838 28343277 ~ 28347474 (-) True G43670
TU54394 lncRNA downstream 232606 28229410 ~ 28234706 (-) True G43626
TU54342 lncRNA downstream 394525 28070138 ~ 28072787 (-) False G43594
TU54338 lncRNA downstream 404859 28062249 ~ 28062453 (-) True G43593
TU54337 lncRNA downstream 406143 28060844 ~ 28061169 (-) True G43592
TU54457 lncRNA upstream 2428 28470334 ~ 28470537 (-) True G43685
TU54458 lncRNA upstream 7202 28475108 ~ 28475326 (-) True G43686
TU54459 lncRNA upstream 7550 28475456 ~ 28476100 (-) True G43687
TU54460 lncRNA upstream 9249 28477155 ~ 28477508 (-) True G43688
TU54461 lncRNA upstream 12179 28480085 ~ 28480483 (-) True G43689
AMCG00013326 mRNA downstream 249254 28210403 ~ 28218058 (-) True AMCG00013326
AMCG00013325 mRNA downstream 267519 28196957 ~ 28199793 (-) True AMCG00013325
AMCG00013319 mRNA downstream 337180 28128668 ~ 28130132 (-) True AMCG00013319
AMCG00013318 mRNA downstream 388610 28074541 ~ 28078702 (-) True AMCG00013318
AMCG00013313 mRNA downstream 539985 27917922 ~ 27927327 (-) True AMCG00013313
AMCG00013331 mRNA upstream 25040 28492946 ~ 28495999 (-) True AMCG00013331
AMCG00013332 mRNA upstream 34116 28502022 ~ 28521437 (-) True AMCG00013332
AMCG00013339 mRNA upstream 304027 28771933 ~ 28777474 (-) True AMCG00013339
AMCG00013348 mRNA upstream 506784 28974690 ~ 28989005 (-) True AMCG00013348
AMCG00013349 mRNA upstream 523531 28991437 ~ 28996380 (-) True AMCG00013349
TU54344 other downstream 394525 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 898161 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 1174239 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 1909988 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 2950349 25516080 ~ 25516963 (-) True G43070
TU54700 other upstream 785490 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 1538858 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 1613130 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 1613130 30081036 ~ 30083345 (-) True AMCG00013386
TU55007 other upstream 1697911 30165817 ~ 30169136 (-) False AMCG00013390

Expression Profile